Variant report

Variant	rs546495738
Chromosome Location	chr3:34119355-34119356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3525372	chr3:34118598-34121396	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3525376	chr3:34118998-34121296	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34115800-34120200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:34115800-34120400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:34116000-34120200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:34119000-34119400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:34119000-34119800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:34119000-34119800	Flanking Active TSS	GM12878-XiMat	blood
7	chr3:34119000-34120200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:34119000-34120600	Enhancers	Fetal Brain Male	brain
9	chr3:34119200-34119400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:34119200-34119400	Active TSS	Brain Anterior Caudate	brain
11	chr3:34119200-34119400	Enhancers	Brain Substantia Nigra	brain
12	chr3:34119200-34119600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:34119200-34119600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:34119200-34119600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:34119200-34119600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr3:34119200-34119800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:34119200-34119800	Active TSS	Brain Germinal Matrix	brain
18	chr3:34119200-34119800	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr3:34119200-34120000	Flanking Active TSS	Fetal Brain Female	brain
20	chr3:34119200-34120400	Enhancers	HUES48 Cell Line	embryonic stem cell

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