The 2.0 version of rSNPBase

Variant report

Variant rs546517125
Chromosome Location chr3:17214707-17214708
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:17191400-17217600 Weak transcription Small Intestine intestine
2 chr3:17195000-17224200 Weak transcription Fetal Kidney kidney
3 chr3:17195200-17223000 Weak transcription Fetal Brain Female brain
4 chr3:17195800-17219000 Strong transcription Primary B cells from peripheral blood blood
5 chr3:17198400-17225200 Weak transcription HMEC breast
6 chr3:17200200-17216800 Weak transcription HSMMtube muscle
7 chr3:17200400-17216400 Weak transcription NHDF-Ad bronchial
8 chr3:17200400-17216600 Weak transcription NH-A brain
9 chr3:17200800-17225600 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr3:17201000-17216400 Weak transcription Muscle Satellite Cultured Cells --
11 chr3:17201000-17220400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr3:17201200-17236200 Weak transcription Fetal Brain Male brain
13 chr3:17202400-17216400 Weak transcription HSMM muscle
14 chr3:17202400-17217200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr3:17202800-17217400 Weak transcription HUVEC blood vessel
16 chr3:17203200-17216600 Weak transcription Colon Smooth Muscle Colon
17 chr3:17203200-17224400 Weak transcription A549 lung
18 chr3:17203800-17217200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr3:17203800-17244200 Weak transcription Colonic Mucosa Colon
20 chr3:17204200-17216600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr3:17204400-17216600 Weak transcription Right Atrium heart
22 chr3:17204400-17221200 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr3:17206800-17216400 Weak transcription Fetal Heart heart
24 chr3:17208000-17223600 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr3:17208200-17216600 Weak transcription NHLF lung
26 chr3:17208200-17217200 Weak transcription Brain Inferior Temporal Lobe brain
27 chr3:17208200-17244000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr3:17208400-17215800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr3:17208400-17216600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr3:17208400-17216600 Weak transcription Osteobl bone
31 chr3:17208400-17217200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr3:17208400-17221000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr3:17208400-17221000 Weak transcription Brain Anterior Caudate brain
34 chr3:17208400-17223600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr3:17208400-17224400 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr3:17208400-17228600 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr3:17208400-17243800 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr3:17208400-17244000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr3:17208600-17221000 Weak transcription Fetal Thymus thymus
40 chr3:17208600-17224600 Weak transcription HepG2 liver
41 chr3:17208800-17234400 Weak transcription Brain Angular Gyrus brain
42 chr3:17209000-17215600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr3:17209000-17216400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr3:17209000-17216800 Weak transcription NHEK skin
45 chr3:17209000-17221000 Weak transcription Primary T cells fromperipheralblood blood
46 chr3:17209000-17221000 Weak transcription GM12878-XiMat blood
47 chr3:17209000-17234000 Weak transcription Brain Substantia Nigra brain
48 chr3:17209200-17216800 Weak transcription Rectal Smooth Muscle rectum
49 chr3:17209200-17216800 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr3:17209200-17217000 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015