Variant report

Variant	rs546520190
Chromosome Location	chr4:26443720-26443721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26443090..26444766-chr4:27004196..27006740,2	MCF-7	breast:
2	chr4:26439053..26441508-chr4:26443087..26445412,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10467	chr4:26442264-26454782	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	esv3464934	chr4:26442625-26454253	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3464936	chr4:26442630-26454272	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3464935	chr4:26442653-26454262	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3464937	chr4:26442766-26454169	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26423200-26446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
3	chr4:26431800-26444400	Weak transcription	Gastric	stomach
4	chr4:26431800-26445200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:26432600-26444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:26432600-26445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:26433600-26444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:26433800-26444200	Weak transcription	HepG2	liver
9	chr4:26436200-26446000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:26436400-26445800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:26436400-26456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:26439600-26444200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:26439800-26445400	Weak transcription	Fetal Thymus	thymus
14	chr4:26440200-26444200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:26440200-26444400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:26440200-26444600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:26440200-26445200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:26440400-26444800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:26440600-26445800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:26440800-26444400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:26440800-26454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:26441200-26445000	Weak transcription	Fetal Brain Female	brain
23	chr4:26441400-26444400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr4:26441600-26444400	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:26441800-26444000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:26442200-26443800	Enhancers	Colon Smooth Muscle	Colon
27	chr4:26442400-26443800	Enhancers	Brain Hippocampus Middle	brain
28	chr4:26442600-26443800	Enhancers	Fetal Heart	heart
29	chr4:26442600-26443800	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:26442800-26445800	Weak transcription	NHLF	lung
31	chr4:26443000-26445200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:26443000-26445400	Weak transcription	NHDF-Ad	bronchial
33	chr4:26443000-26446400	Weak transcription	HSMMtube	muscle
34	chr4:26443000-26450600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:26443200-26443800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
36	chr4:26443200-26444000	Weak transcription	HSMM	muscle
37	chr4:26443200-26444400	Enhancers	Stomach Mucosa	stomach
38	chr4:26443400-26444200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:26443400-26445800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr4:26443400-26446800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr4:26443400-26453200	Weak transcription	Osteobl	bone
42	chr4:26443600-26454200	Weak transcription	Fetal Lung	lung

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