Variant report

Variant	rs546521161
Chromosome Location	chr10:16237800-16237801
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv3342684	chr10:16224995-16255206	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv24860	chr10:16235955-16242475	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv24831	chr10:16235956-16242475	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3364575	chr10:16236995-16272985	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16217400-16239000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:16235400-16239000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:16236000-16239000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:16236000-16239000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:16236400-16238000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:16236800-16237800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr10:16236800-16239200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:16236800-16239400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:16237400-16237800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:16237600-16237800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr10:16237600-16237800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
12	chr10:16237600-16238000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr10:16237600-16238000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr10:16237600-16238000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr10:16237600-16238000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr10:16237800-16238400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr10:16237800-16238800	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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