Variant report

Variant	rs546532201
Chromosome Location	chr4:1226012-1226013
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr4:1225792-1226047	HepG2	liver:	n/a	n/a
2	POLR2A	chr4:1225869-1226034	K562	blood:	n/a	n/a
3	POLR2A	chr4:1224742-1226033	K562	blood:	n/a	n/a
4	NR2F2	chr4:1225714-1226179	HepG2	liver:	n/a	n/a
5	FOSL2	chr4:1225711-1226051	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:1159882..1162594-chr4:1225934..1228487,2	MCF-7	breast:
2	chr4:1221651..1224397-chr4:1224479..1227066,2	MCF-7	breast:
3	chr4:1219143..1221497-chr4:1224349..1226849,2	MCF-7	breast:

Variant related genes	Relation type
CTBP1	TF binding region
ENSG00000273179	Chromatin interaction
ENSG00000159692	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
6	nsv878329	chr4:1147407-1254930	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv593276	chr4:1159680-1227469	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv461151	chr4:1159680-1236840	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv593277	chr4:1159680-1236840	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv878331	chr4:1159680-1254930	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
13	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
14	nsv461153	chr4:1174861-1254930	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
15	nsv593279	chr4:1174861-1254930	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
16	nsv461154	chr4:1179213-1254930	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
17	nsv593280	chr4:1179213-1254930	Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	nsv878332	chr4:1179213-1254930	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	nsv997971	chr4:1191256-1518521	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
20	nsv878333	chr4:1193832-1254930	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
21	nsv461155	chr4:1203265-1352685	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
22	nsv593281	chr4:1203265-1352685	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
23	nsv1002097	chr4:1212573-1320086	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
24	nsv536986	chr4:1212573-1320086	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
25	nsv822432	chr4:1225517-1226594	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1204400-1227200	Strong transcription	Fetal Intestine Small	intestine
2	chr4:1204400-1235800	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:1204600-1236200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:1204800-1226400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:1204800-1237000	Weak transcription	Psoas Muscle	Psoas
6	chr4:1205000-1226200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:1205400-1226800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:1205800-1228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:1206000-1226800	Strong transcription	Fetal Brain Female	brain
10	chr4:1206400-1226800	Strong transcription	Brain Germinal Matrix	brain
11	chr4:1206600-1227600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:1208800-1228000	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr4:1211400-1235400	Weak transcription	Small Intestine	intestine
14	chr4:1211600-1235400	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:1212600-1237000	Strong transcription	Dnd41	blood
16	chr4:1214200-1235600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:1214200-1236800	Strong transcription	Primary T cells from cord blood	blood
18	chr4:1214400-1235200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:1214400-1235600	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr4:1214400-1236400	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr4:1214400-1238400	Strong transcription	Thymus	Thymus
22	chr4:1214600-1226400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:1214600-1227400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:1214600-1227600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:1214600-1235800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:1214600-1236200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:1215000-1226800	Strong transcription	Colonic Mucosa	Colon
28	chr4:1215000-1235200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:1215000-1236000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr4:1215400-1226600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:1215400-1236000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr4:1215800-1226600	Strong transcription	Fetal Stomach	stomach
33	chr4:1215800-1235600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr4:1216400-1227800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:1216400-1227800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr4:1216400-1235400	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr4:1216400-1236000	Strong transcription	Fetal Thymus	thymus
38	chr4:1216600-1227200	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr4:1216600-1236000	Strong transcription	GM12878-XiMat	blood
40	chr4:1217000-1226800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr4:1217000-1226800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr4:1217200-1235400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr4:1217200-1235800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr4:1217600-1235200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:1218200-1234600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr4:1218400-1226400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:1218800-1235400	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr4:1219000-1235400	Strong transcription	Gastric	stomach
49	chr4:1219000-1240200	Weak transcription	Hela-S3	cervix
50	chr4:1219800-1234800	Strong transcription	Fetal Intestine Large	intestine

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