Variant report

Variant	rs546552461
Chromosome Location	chr11:18128656-18128657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv983174	chr11:18127720-18135636	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18128000-18128800	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr11:18128000-18128800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:18128000-18129000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:18128000-18129000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:18128200-18128800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:18128200-18128800	Weak transcription	Right Atrium	heart
7	chr11:18128200-18128800	Enhancers	Hela-S3	cervix
8	chr11:18128400-18137400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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