Variant report

Variant	rs546561462
Chromosome Location	chr11:32608704-32608705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:32608525-32608725	SH-SY5Y	brain:	n/a	n/a
2	POLR2A	chr11:32608004-32608708	HepG2	liver:	n/a	n/a
3	JUND	chr11:32608199-32608725	K562	blood:	n/a	chr11:32608468-32608480
4	RCOR1	chr11:32608197-32608733	K562	blood:	n/a	n/a
5	RCOR1	chr11:32608238-32608733	K562	blood:	n/a	n/a
6	POLR2A	chr11:32607902-32609333	K562	blood:	n/a	n/a
7	CTCF	chr11:32608029-32608916	A549	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:32455462..32457058-chr11:32608687..32611459,2	K562	blood:
2	chr11:32440943..32443516-chr11:32607260..32609866,2	K562	blood:
3	chr11:32551423..32553117-chr11:32607270..32609512,2	MCF-7	breast:
4	chr11:32602922..32605619-chr11:32607155..32608879,2	K562	blood:
5	chr11:32455134..32460391-chr11:32603988..32611641,10	K562	blood:

No data

Variant related genes	Relation type
EIF3M	TF binding region
ENSG00000183242	Chromatin interaction
ENSG00000184937	Chromatin interaction
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3459064	chr11:32608637-32610226	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv3459075	chr11:32608689-32610140	Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32606400-32609000	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:32606800-32609600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:32606800-32610000	Weak transcription	Placenta	Placenta
4	chr11:32606800-32610200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:32606800-32610200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:32606800-32610200	Weak transcription	Lung	lung
7	chr11:32606800-32610400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:32606800-32611000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:32606800-32611400	Weak transcription	Esophagus	oesophagus
10	chr11:32606800-32611400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:32606800-32611400	Weak transcription	Stomach Mucosa	stomach
12	chr11:32606800-32613400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:32606800-32613400	Weak transcription	Aorta	Aorta
14	chr11:32606800-32616000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:32607000-32609400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:32607000-32609800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:32607000-32610000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:32607000-32610000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr11:32607000-32610200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:32607000-32610200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr11:32607000-32610200	Weak transcription	HSMMtube	muscle
22	chr11:32607000-32610400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:32607000-32610400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:32607000-32611400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:32607000-32617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:32607200-32609000	Enhancers	HepG2	liver
27	chr11:32607200-32609200	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr11:32607200-32609400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:32607200-32609600	Weak transcription	Fetal Intestine Small	intestine
30	chr11:32607200-32609600	Weak transcription	Fetal Stomach	stomach
31	chr11:32607200-32609800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:32607200-32610000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr11:32607200-32610000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:32607200-32610000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:32607200-32610000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:32607200-32610200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:32607200-32610200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr11:32607200-32610200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr11:32607200-32610200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr11:32607200-32610200	Weak transcription	Fetal Brain Female	brain
41	chr11:32607200-32610200	Weak transcription	Fetal Lung	lung
42	chr11:32607200-32610200	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:32607200-32610200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:32607200-32610200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:32607200-32610200	Weak transcription	Thymus	Thymus
46	chr11:32607200-32610400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:32607200-32610800	Weak transcription	Brain Substantia Nigra	brain
48	chr11:32607200-32612000	Weak transcription	Brain Angular Gyrus	brain
49	chr11:32607400-32608800	Weak transcription	Fetal Kidney	kidney
50	chr11:32607400-32609200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links