Variant report

Variant	rs546563827
Chromosome Location	chr6:27634876-27634877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27630640..27633074-chr6:27634485..27635995,2	K562	blood:
2	chr6:27634865..27637483-chr6:27858209..27861197,3	K562	blood:
3	chr6:27632657..27637879-chr6:27644957..27648332,5	K562	blood:
4	chr6:27570023..27571795-chr6:27634776..27636540,2	K562	blood:
5	chr6:27597258..27599757-chr6:27633209..27635180,2	K562	blood:
6	chr6:27154773..27157322-chr6:27634142..27636330,2	MCF-7	breast:
7	chr6:27155324..27157508-chr6:27634451..27636223,2	K562	blood:
8	chr6:27099860..27102735-chr6:27633171..27635256,2	K562	blood:
9	chr6:27634605..27637879-chr6:27644998..27648332,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIST1H2BL-1	chr6:27634762-27635538	XLOC_005659

No data

Variant related genes	Relation type
ENSG00000238648	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv525669	chr6:27623511-27657647	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv883511	chr6:27623511-27660508	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	esv2830157	chr6:27634640-27657647	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv518945	chr6:27634640-27668013	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27633400-27635200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:27634600-27635000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:27634600-27635600	Flanking Active TSS	K562	blood
4	chr6:27634600-27638400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:27634600-27640800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:27634800-27635000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:27634800-27635000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
8	chr6:27634800-27635000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:27634800-27635000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:27634800-27635000	Flanking Active TSS	HepG2	liver
11	chr6:27634800-27635200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:27634800-27635200	Flanking Active TSS	A549	lung
13	chr6:27634800-27635200	Active TSS	HMEC	breast
14	chr6:27634800-27635400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr6:27634800-27635800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:27634800-27635800	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:27634800-27636200	Flanking Active TSS	NHEK	skin
18	chr6:27634800-27637600	Active TSS	H9 Cell Line	embryonic stem cell
19	chr6:27634800-27638400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
20	chr6:27634800-27638400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:27634800-27638800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:27634800-27639400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr6:27634800-27640000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr6:27634800-27641400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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