Variant report

Variant	rs546584417
Chromosome Location	chr11:104916527-104916528
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:104915766-104916641	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CARD16	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv468863	chr11:104875261-104918517	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv556219	chr11:104875261-104918517	Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv517089	chr11:104915563-104930676	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
13	nsv470	chr11:104916361-104961230	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104912600-104917800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:104912600-104920800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:104913600-104916600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:104914000-104916600	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr11:104914200-104916600	Active TSS	Rectal Smooth Muscle	rectum
6	chr11:104914600-104916600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:104914600-104918000	Weak transcription	Gastric	stomach
8	chr11:104914600-104918000	Weak transcription	Spleen	Spleen
9	chr11:104915600-104916600	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr11:104915600-104916800	Flanking Active TSS	NHEK	skin
11	chr11:104915800-104916800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:104915800-104918600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr11:104915800-104920400	Enhancers	HepG2	liver
14	chr11:104916000-104916600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr11:104916000-104916800	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr11:104916000-104917800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:104916000-104918000	Weak transcription	Lung	lung
18	chr11:104916200-104916600	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr11:104916200-104916600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
20	chr11:104916200-104916600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr11:104916200-104916600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr11:104916200-104916600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr11:104916200-104916600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:104916200-104916600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr11:104916200-104916600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr11:104916200-104916600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr11:104916200-104916600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
28	chr11:104916200-104916600	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr11:104916200-104916600	Flanking Active TSS	NHLF	lung
30	chr11:104916200-104916800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:104916200-104916800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:104916200-104916800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:104916200-104916800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr11:104916200-104916800	Enhancers	Esophagus	oesophagus
35	chr11:104916200-104916800	Enhancers	Fetal Intestine Small	intestine
36	chr11:104916200-104916800	Enhancers	Fetal Muscle Trunk	muscle
37	chr11:104916200-104916800	Enhancers	Left Ventricle	heart
38	chr11:104916200-104916800	Enhancers	Small Intestine	intestine
39	chr11:104916200-104916800	Flanking Active TSS	Dnd41	blood
40	chr11:104916200-104916800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr11:104916200-104916800	Flanking Active TSS	NHDF-Ad	bronchial
42	chr11:104916200-104917000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:104916200-104917600	Enhancers	Fetal Stomach	stomach
44	chr11:104916200-104917800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:104916200-104918000	Weak transcription	Brain Substantia Nigra	brain
46	chr11:104916200-104918200	Enhancers	Fetal Intestine Large	intestine
47	chr11:104916200-104920200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:104916400-104916600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:104916400-104916600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:104916400-104916600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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