Variant report

Variant rs546593089
Chromosome Location chr20:25175489-25175490
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:25168200-25175800 Weak transcription Placenta Amnion Placenta Amnion
2 chr20:25169200-25175600 Weak transcription Fetal Lung lung
3 chr20:25169400-25175600 Weak transcription Gastric stomach
4 chr20:25171400-25175600 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr20:25171800-25175600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr20:25172200-25175800 Weak transcription Psoas Muscle Psoas
7 chr20:25172600-25175600 Weak transcription HMEC breast
8 chr20:25172800-25175600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr20:25173000-25175600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr20:25173000-25175600 Weak transcription Placenta Placenta
11 chr20:25173000-25175800 Weak transcription Right Atrium heart
12 chr20:25173200-25175800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr20:25173200-25176000 Weak transcription Ovary ovary
14 chr20:25174200-25175600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr20:25174600-25175800 Enhancers Fetal Thymus thymus
16 chr20:25175000-25175600 Enhancers Primary T cells fromperipheralblood blood
17 chr20:25175000-25175600 Enhancers Thymus Thymus
18 chr20:25175000-25175800 Enhancers Fetal Brain Male brain
19 chr20:25175000-25175800 Enhancers Fetal Heart heart
20 chr20:25175200-25175600 Enhancers Primary T helper naive cells fromperipheralblood blood
21 chr20:25175200-25175600 Enhancers Primary T regulatory cells fromperipheralblood blood
22 chr20:25175200-25175600 Enhancers Skeletal Muscle Female skeletal muscle
23 chr20:25175200-25175600 Enhancers Dnd41 blood
24 chr20:25175200-25175800 Flanking Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr20:25175200-25175800 Enhancers Primary B cells from peripheral blood blood
26 chr20:25175200-25175800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
27 chr20:25175200-25175800 Enhancers Primary T helper 17 cells PMA-I stimulated --
28 chr20:25175200-25175800 Enhancers Primary Natural Killer cells fromperipheralblood blood
29 chr20:25175200-25175800 Enhancers Primary T killer naive cells fromperipheralblood blood
30 chr20:25175200-25175800 Weak transcription Aorta Aorta
31 chr20:25175200-25175800 Enhancers Left Ventricle heart
32 chr20:25175200-25175800 Enhancers Right Ventricle heart
33 chr20:25175200-25176000 Enhancers Lung lung
34 chr20:25175400-25175600 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
35 chr20:25175400-25175600 Enhancers Primary T helper naive cells from peripheral blood blood
36 chr20:25175400-25175600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr20:25175400-25175600 Enhancers Liver Liver
38 chr20:25175400-25175600 Enhancers Brain Anterior Caudate brain
39 chr20:25175400-25175600 Enhancers Brain Cingulate Gyrus brain
40 chr20:25175400-25175600 Enhancers Brain Inferior Temporal Lobe brain
41 chr20:25175400-25175600 Enhancers Colon Smooth Muscle Colon
42 chr20:25175400-25175600 Enhancers Stomach Smooth Muscle stomach
43 chr20:25175400-25175800 Enhancers Breast Myoepithelial Primary Cells Breast
44 chr20:25175400-25175800 Enhancers Primary T helper cells PMA-I stimulated --
45 chr20:25175400-25175800 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
46 chr20:25175400-25175800 Enhancers Primary mononuclear cells fromperipheralblood Blood
47 chr20:25175400-25175800 Flanking Active TSS Brain Angular Gyrus brain
48 chr20:25175400-25175800 Enhancers Brain Hippocampus Middle brain
49 chr20:25175400-25175800 Enhancers Duodenum Smooth Muscle Duodenum
50 chr20:25175400-25175800 Enhancers Fetal Adrenal Gland Adrenal Gland

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