Variant report

Variant	rs546604133
Chromosome Location	chr7:27182611-27182612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr7:27182470-27183745	A549	lung:	n/a	n/a
2	MAZ	chr7:27181899-27183934	IMR90	lung:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
3	SUZ12	chr7:27181362-27183791	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr7:27182597-27183140	A549	lung:	n/a	n/a
5	CHD2	chr7:27182490-27183721	Hela-S3	cervix:	n/a	n/a
6	TAF1	chr7:27182379-27183464	ECC-1	luminal epithelium:	n/a	n/a
7	POLR2A	chr7:27182442-27182988	Gliobla	brain:	n/a	n/a
8	SMARCC1	chr7:27182373-27183631	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr7:27182332-27183522	HepG2	liver:	n/a	n/a
10	POLR2A	chr7:27181283-27183567	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr7:27182305-27183467	HepG2	liver:	n/a	n/a
12	POLR2A	chr7:27182476-27182953	H1-neurons	neurons:	n/a	n/a
13	POLR2A	chr7:27181251-27183530	MCF10A-Er-Src	breast:	n/a	n/a
14	MAX	chr7:27182342-27183690	Hela-S3	cervix:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
15	MAX	chr7:27182120-27183859	A549	lung:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
16	SIN3AK20	chr7:27182473-27183682	PANC-1	pancreas:	n/a	n/a
17	MAX	chr7:27182274-27183779	ECC-1	luminal epithelium:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
18	ZNF263	chr7:27182261-27184082	HEK293-T-REx	kidney:	n/a	chr7:27182506-27182515 chr7:27182418-27182427
19	MAX	chr7:27182586-27183743	ECC-1	luminal epithelium:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
20	POLR2A	chr7:27172709-27186093	IMR90	lung:	n/a	n/a
21	RCOR1	chr7:27182391-27183701	Hela-S3	cervix:	n/a	n/a
22	RAD21	chr7:27182143-27183820	IMR90	lung:	n/a	chr7:27183536-27183550 chr7:27183529-27183548 chr7:27183535-27183549
23	MAZ	chr7:27182339-27183726	Hela-S3	cervix:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
24	SMARCB1	chr7:27181874-27183698	Hela-S3	cervix:	n/a	n/a
25	SMC3	chr7:27182103-27183749	Hela-S3	cervix:	n/a	chr7:27183533-27183547
26	POLR2A	chr7:27182376-27184899	HEK293	kidney:	n/a	n/a
27	POLR2A	chr7:27182434-27183542	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr7:27182590-27183600	ECC-1	luminal epithelium:	n/a	n/a
29	POLR2A	chr7:27181680-27182678	HUVEC	blood vessel:	n/a	n/a
30	MAX	chr7:27182540-27183769	A549	lung:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
31	SMARCC2	chr7:27182529-27183612	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr7:27182350-27183351	MCF-7	breast:	n/a	n/a
33	RAD21	chr7:27182184-27183822	ECC-1	luminal epithelium:	n/a	chr7:27183536-27183550 chr7:27183529-27183548 chr7:27183535-27183549
34	POLR2A	chr7:27182444-27183736	Hela-S3	cervix:	n/a	n/a
35	MAX	chr7:27182581-27183772	HepG2	liver:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
36	MAX	chr7:27182521-27183758	MCF-7	breast:	n/a	chr7:27183376-27183389 chr7:27183376-27183389
37	POLR2A	chr7:27182409-27183473	Hela-S3	cervix:	n/a	n/a
38	HCFC1	chr7:27182172-27184274	Hela-S3	cervix:	n/a	n/a
39	CTBP2	chr7:27181952-27183164	H1-hESC	embryonic stem cell:	n/a	n/a
40	SUZ12	chr7:27181328-27183158	NT2-D1	testis:	n/a	n/a
41	POLR2A	chr7:27182321-27183575	ECC-1	luminal epithelium:	n/a	n/a
42	POLR2A	chr7:27182301-27183330	MCF-7	breast:	n/a	n/a
43	MXI1	chr7:27182604-27183712	Hela-S3	cervix:	n/a	n/a
44	POLR2A	chr7:27182125-27183732	Hela-S3	cervix:	n/a	n/a
45	SRF	chr7:27182554-27183825	MCF-7	breast:	n/a	chr7:27183353-27183366 chr7:27183349-27183367 chr7:27183355-27183366 chr7:27183352-27183366 chr7:27183352-27183367 chr7:27183355-27183364 chr7:27183354-27183365 chr7:27183353-27183364
46	SIN3AK20	chr7:27181394-27183853	MCF-7	breast:	n/a	n/a
47	CTCF	chr7:27181147-27182629	A549	lung:	n/a	chr7:27181755-27181764
48	HA-E2F1	chr7:27182529-27183735	MCF-7	breast:	n/a	chr7:27183574-27183584
49	RAD21	chr7:27182072-27183748	Hela-S3	cervix:	n/a	chr7:27183536-27183550 chr7:27183529-27183548 chr7:27183535-27183549
50	CHD1	chr7:27172934-27188024	IMR90	lung:	n/a	chr7:27183718-27183728 chr7:27179430-27179440

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27178227..27179948-chr7:27181213..27183390,2	MCF-7	breast:
2	7:27082525-27089724..7:27181770-27195105	Hela-S3	cervix:
3	7:27181770-27195105..7:27230275-27238414	GM12878	blood:
4	7:27162022-27164727..7:27181770-27195105	H1-hESC	embryonic stem cell:	embryo
5	chr7:27181480..27183219-chr7:27189259..27191878,2	MCF-7	breast:
6	chr7:26902947..26905299-chr7:27180909..27183737,2	MCF-7	breast:
7	chr7:26894665..26897647-chr7:27182466..27184718,4	MCF-7	breast:
8	chr7:27170268..27172208-chr7:27181167..27182998,2	MCF-7	breast:
9	chr7:27154930..27155509-chr7:27182224..27183181,2	Hela-S3	cervix:
10	chr7:27181736..27184705-chr7:27188724..27191664,4	MCF-7	breast:

Variant related genes	Relation type
HOXA-AS3	TF binding region
HOXA5	TF binding region
HOXA3	TF binding region
ENSG00000197576	Chromatin interaction
ENSG00000106006	Chromatin interaction
ENSG00000243766	Chromatin interaction
ENSG00000213786	Chromatin interaction
ENSG00000253552	Chromatin interaction
ENSG00000105997	Chromatin interaction
ENSG00000254369	Chromatin interaction
ENSG00000005020	Chromatin interaction
ENSG00000106031	Chromatin interaction
ENSG00000253508	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv887856	chr7:27073731-27297791	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
6	nsv824038	chr7:27119294-27284522	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
7	nsv887857	chr7:27120689-27229549	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
8	nsv824039	chr7:27121825-27294951	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
9	nsv824040	chr7:27121870-27295010	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
10	nsv887858	chr7:27127231-27188659	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
11	nsv887860	chr7:27127231-27196069	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
12	nsv887859	chr7:27127231-27196113	Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv887861	chr7:27127231-27206688	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
14	nsv887862	chr7:27127231-27217359	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
15	nsv887863	chr7:27127231-27243106	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
16	nsv887864	chr7:27127231-27243962	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
17	nsv887865	chr7:27127231-27247279	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
18	nsv887866	chr7:27127231-27248373	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
19	nsv887867	chr7:27127231-27252246	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
20	nsv824041	chr7:27128039-27294951	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
21	nsv887868	chr7:27135314-27202289	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
22	nsv887869	chr7:27135314-27297791	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
23	nsv887873	chr7:27136308-27186495	Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
24	nsv887874	chr7:27136308-27196069	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
25	nsv1020608	chr7:27139892-27324004	Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
26	nsv538807	chr7:27139892-27324004	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
27	nsv1033316	chr7:27140645-27237951	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
28	nsv606465	chr7:27143757-27229549	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	174 gene(s)	inside rSNPs	diseases
29	nsv606466	chr7:27145024-27197319	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
30	nsv606467	chr7:27145100-27196113	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
31	nsv887875	chr7:27145100-27243962	Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
32	nsv532118	chr7:27146920-27354205	Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
33	nsv5674	chr7:27152562-27197341	Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
34	nsv887876	chr7:27168858-27196069	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
35	nsv824042	chr7:27169231-27247232	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
36	nsv887877	chr7:27169388-27217359	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
37	nsv887878	chr7:27175295-27214557	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
38	nsv887879	chr7:27175295-27297791	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
39	esv1798853	chr7:27181568-27309266	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	150 gene(s)	inside rSNPs	diseases
40	esv3372590	chr7:27181652-27184200	Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
41	nsv526526	chr7:27182142-27196113	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27175800-27184800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr7:27177600-27183200	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr7:27177600-27184400	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr7:27178600-27183000	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:27179000-27183400	Active TSS	Lung	lung
6	chr7:27179200-27183200	Weak transcription	Dnd41	blood
7	chr7:27179400-27183200	Transcr. at gene 5' and 3'	Fetal Lung	lung
8	chr7:27180000-27183600	Active TSS	Stomach Smooth Muscle	stomach
9	chr7:27180600-27183000	Active TSS	Rectal Smooth Muscle	rectum
10	chr7:27180600-27183600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:27180600-27185600	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr7:27180800-27183600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
13	chr7:27181200-27182800	Weak transcription	NHDF-Ad	bronchial
14	chr7:27181200-27183600	Active TSS	HMEC	breast
15	chr7:27181200-27184000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr7:27181400-27183200	Active TSS	Psoas Muscle	Psoas
17	chr7:27181400-27183200	Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr7:27181400-27183400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:27181400-27183400	Active TSS	Aorta	Aorta
20	chr7:27181400-27183600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:27181400-27183600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:27181400-27183800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr7:27181400-27184000	Active TSS	A549	lung
24	chr7:27181400-27184400	Active TSS	Esophagus	oesophagus
25	chr7:27181400-27184800	Active TSS	Right Atrium	heart
26	chr7:27181400-27185400	Transcr. at gene 5' and 3'	Colonic Mucosa	Colon
27	chr7:27181600-27183000	Active TSS	Fetal Kidney	kidney
28	chr7:27181600-27183000	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr7:27181600-27183000	Active TSS	Rectal Mucosa Donor 31	rectum
30	chr7:27181600-27183200	Active TSS	Primary hematopoietic stem cells	blood
31	chr7:27181600-27183200	Active TSS	Colon Smooth Muscle	Colon
32	chr7:27181600-27183200	Active TSS	Osteobl	bone
33	chr7:27181600-27183400	Active TSS	HepG2	liver
34	chr7:27181600-27183400	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
35	chr7:27181600-27183600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:27181600-27183600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:27181600-27183600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:27181600-27183600	Active TSS	Fetal Intestine Large	intestine
39	chr7:27181600-27183600	Active TSS	NHEK	skin
40	chr7:27181600-27184400	Bivalent/Poised TSS	Fetal Stomach	stomach
41	chr7:27181600-27185800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:27181800-27182800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:27181800-27182800	Bivalent/Poised TSS	NH-A	brain
44	chr7:27181800-27183000	Bivalent/Poised TSS	Small Intestine	intestine
45	chr7:27181800-27183200	Bivalent/Poised TSS	Primary monocytes fromperipheralblood	blood
46	chr7:27181800-27183600	Active TSS	Stomach Mucosa	stomach
47	chr7:27181800-27183600	Active TSS	HUVEC	blood vessel
48	chr7:27181800-27190400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
49	chr7:27182000-27182800	Active TSS	Gastric	stomach
50	chr7:27182000-27183000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links