Variant report

Variant	rs546619581
Chromosome Location	chr14:65003460-65003461
allele	-/AAAC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:65003387-65003912	A549	lung:	n/a	chr14:65003702-65003713
2	CEBPB	chr14:65003134-65004052	A549	lung:	n/a	chr14:65003702-65003713
3	TCF12	chr14:65003123-65004064	A549	lung:	n/a	n/a
4	SP1	chr14:65003115-65004006	A549	lung:	n/a	n/a
5	TEAD4	chr14:65003197-65003534	H1-hESC	embryonic stem cell:	n/a	n/a
6	TEAD4	chr14:65003292-65004009	HepG2	liver:	n/a	n/a
7	CEBPB	chr14:65003352-65003950	IMR90	lung:	n/a	chr14:65003702-65003713
8	FOS	chr14:65003334-65003555	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64969721..64971407-chr14:65001897..65003648,2	K562	blood:
2	chr14:64967941..64976890-chr14:65001097..65012463,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259160	TF binding region
HSPA2	TF binding region
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390097	chr14:65002586-65009255	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64974800-65006000	Weak transcription	Ovary	ovary
2	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
3	chr14:64978200-65006000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:64979200-65005800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:64982000-65005800	Weak transcription	Fetal Heart	heart
6	chr14:64987800-65005000	Weak transcription	Pancreas	Pancrea
7	chr14:64989200-65006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:64989800-65005800	Weak transcription	Right Ventricle	heart
9	chr14:64990200-65005800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:64990200-65005800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr14:64990200-65005800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:64990200-65006000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:64990200-65006000	Weak transcription	Aorta	Aorta
14	chr14:64990200-65006000	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:64990200-65006000	Weak transcription	Left Ventricle	heart
16	chr14:64990200-65006200	Weak transcription	Small Intestine	intestine
17	chr14:64990400-65003600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr14:64990400-65005800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:64990400-65005800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:64990400-65005800	Weak transcription	Adipose Nuclei	Adipose
21	chr14:64990400-65005800	Weak transcription	Fetal Kidney	kidney
22	chr14:64990400-65005800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:64990400-65005800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:64990400-65006000	Weak transcription	Fetal Intestine Large	intestine
25	chr14:64990600-65005800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:64990800-65005800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:64991000-65005600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr14:64991000-65005600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:64992000-65005800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:64992200-65005800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:64992400-65003600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:64993400-65005800	Weak transcription	NH-A	brain
33	chr14:64993400-65005800	Weak transcription	NHEK	skin
34	chr14:64993600-65006000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr14:64993800-65005400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:64993800-65005600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:64993800-65005800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr14:64993800-65005800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:64993800-65005800	Weak transcription	Fetal Intestine Small	intestine
40	chr14:64993800-65005800	Weak transcription	GM12878-XiMat	blood
41	chr14:64993800-65006000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr14:64993800-65006000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:64995400-65005600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr14:64995800-65005600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr14:64996400-65005800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:64996400-65006000	Weak transcription	Fetal Lung	lung
47	chr14:64996400-65006200	Weak transcription	HSMM	muscle
48	chr14:64996600-65006200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:64998400-65005600	Weak transcription	HUVEC	blood vessel
50	chr14:65002600-65003600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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