The 2.0 version of rSNPBase

Variant report

Variant rs546619876
Chromosome Location chr12:103888838-103888839
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:103886400-103889200 Enhancers HMEC breast
2 chr12:103887400-103889400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr12:103887800-103889000 Enhancers Primary T helper naive cells from peripheral blood blood
4 chr12:103888000-103889000 Flanking Active TSS Dnd41 blood
5 chr12:103888200-103889000 Enhancers Primary T killer memory cells from peripheral blood blood
6 chr12:103888200-103889000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
7 chr12:103888200-103889000 Flanking Active TSS Fetal Thymus thymus
8 chr12:103888200-103889600 Active TSS Thymus Thymus
9 chr12:103888400-103889000 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
10 chr12:103888400-103889000 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
11 chr12:103888400-103889000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
12 chr12:103888400-103889000 Flanking Active TSS Fetal Brain Female brain
13 chr12:103888400-103889200 Enhancers Fetal Brain Male brain
14 chr12:103888400-103889800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
15 chr12:103888400-103890000 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
16 chr12:103888400-103890200 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
17 chr12:103888400-103890200 Active TSS H9 Cell Line embryonic stem cell
18 chr12:103888400-103890200 Active TSS Brain Angular Gyrus brain
19 chr12:103888600-103889000 Bivalent/Poised TSS ES-WA7 Cell Line embryonic stem cell
20 chr12:103888600-103889000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
21 chr12:103888600-103889000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
22 chr12:103888600-103889000 Flanking Active TSS Brain Anterior Caudate brain
23 chr12:103888600-103889200 Flanking Active TSS Primary B cells from peripheral blood blood
24 chr12:103888600-103889200 Flanking Active TSS Primary T cells fromperipheralblood blood
25 chr12:103888600-103889200 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
26 chr12:103888600-103889400 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
27 chr12:103888600-103889400 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr12:103888600-103889600 Active TSS HUES48 Cell Line embryonic stem cell
29 chr12:103888600-103889600 Bivalent Enhancer Fetal Muscle Leg muscle
30 chr12:103888600-103890000 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
31 chr12:103888600-103890200 Active TSS iPS-15b Cell Line embryonic stem cell
32 chr12:103888800-103889000 Flanking Bivalent TSS/Enh H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr12:103888800-103889000 Flanking Bivalent TSS/Enh hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr12:103888800-103889000 Bivalent Enhancer Breast Myoepithelial Primary Cells Breast
35 chr12:103888800-103889000 Flanking Bivalent TSS/Enh Primary B cells from cord blood blood
36 chr12:103888800-103889000 Flanking Active TSS Primary T cells from cord blood blood
37 chr12:103888800-103889000 Bivalent Enhancer Primary hematopoietic stem cells blood
38 chr12:103888800-103889000 Flanking Bivalent TSS/Enh Primary T helper 17 cells PMA-I stimulated --
39 chr12:103888800-103889000 Flanking Bivalent TSS/Enh Primary Natural Killer cells fromperipheralblood blood
40 chr12:103888800-103889000 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin01 Skin
41 chr12:103888800-103889000 Flanking Active TSS Brain Germinal Matrix brain
42 chr12:103888800-103889000 Flanking Bivalent TSS/Enh Brain Hippocampus Middle brain
43 chr12:103888800-103889000 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
44 chr12:103888800-103889000 Bivalent Enhancer Colon Smooth Muscle Colon
45 chr12:103888800-103889000 Flanking Bivalent TSS/Enh Duodenum Smooth Muscle Duodenum
46 chr12:103888800-103889000 Bivalent Enhancer Esophagus oesophagus
47 chr12:103888800-103889000 Bivalent Enhancer Fetal Stomach stomach
48 chr12:103888800-103889000 Flanking Bivalent TSS/Enh Psoas Muscle Psoas
49 chr12:103888800-103889000 Bivalent/Poised TSS Small Intestine intestine
50 chr12:103888800-103889000 Flanking Active TSS GM12878-XiMat blood

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Last update: Aug 31, 2015