The 2.0 version of rSNPBase

Variant report

Variant rs546629405
Chromosome Location chr3:56797743-56797744
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:56764000-56815800 Weak transcription Fetal Intestine Small intestine
2 chr3:56783400-56802800 Weak transcription Brain Cingulate Gyrus brain
3 chr3:56783600-56802800 Weak transcription Brain Inferior Temporal Lobe brain
4 chr3:56783800-56802800 Weak transcription Brain Hippocampus Middle brain
5 chr3:56789200-56805800 Weak transcription Stomach Smooth Muscle stomach
6 chr3:56789400-56802800 Weak transcription Ovary ovary
7 chr3:56789400-56803200 Weak transcription Fetal Muscle Trunk muscle
8 chr3:56789400-56803200 Weak transcription Fetal Stomach stomach
9 chr3:56789600-56801200 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
10 chr3:56790200-56804600 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr3:56790400-56803200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr3:56790400-56803200 Weak transcription Spleen Spleen
13 chr3:56792600-56809600 Weak transcription Small Intestine intestine
14 chr3:56792800-56798200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr3:56792800-56801200 Strong transcription Dnd41 blood
16 chr3:56792800-56803400 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr3:56793000-56798200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr3:56793000-56801000 Weak transcription NH-A brain
19 chr3:56793000-56802600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
20 chr3:56793000-56802800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr3:56793000-56802800 Weak transcription Brain Anterior Caudate brain
22 chr3:56793000-56803600 Weak transcription Placenta Amnion Placenta Amnion
23 chr3:56793000-56804600 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr3:56793200-56799400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr3:56793200-56802800 Weak transcription Fetal Kidney kidney
26 chr3:56793200-56802800 Weak transcription HMEC breast
27 chr3:56793200-56803400 Weak transcription NHEK skin
28 chr3:56793200-56806000 Weak transcription Duodenum Mucosa Duodenum
29 chr3:56793200-56807200 Weak transcription HUVEC blood vessel
30 chr3:56793200-56817400 Weak transcription Hela-S3 cervix
31 chr3:56793400-56801200 Genic enhancers Primary T helper cells PMA-I stimulated --
32 chr3:56793600-56805400 Weak transcription Esophagus oesophagus
33 chr3:56793600-56809600 Weak transcription Primary hematopoietic stem cells blood
34 chr3:56793800-56798400 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr3:56793800-56803000 Weak transcription HepG2 liver
36 chr3:56793800-56803600 Strong transcription Fetal Thymus thymus
37 chr3:56793800-56805600 Weak transcription Primary B cells from cord blood blood
38 chr3:56794000-56800200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr3:56794400-56798000 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr3:56794800-56798000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr3:56794800-56802000 Weak transcription Primary monocytes fromperipheralblood blood
42 chr3:56795400-56798200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
43 chr3:56795400-56800600 Strong transcription Primary T cells from cord blood blood
44 chr3:56796000-56800000 Strong transcription Thymus Thymus
45 chr3:56796200-56798400 Strong transcription Primary B cells from peripheral blood blood
46 chr3:56796200-56798600 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
47 chr3:56796200-56801400 Genic enhancers Primary T helper cells fromperipheralblood blood
48 chr3:56796400-56801200 Genic enhancers Primary T helper naive cells from peripheral blood blood
49 chr3:56796400-56803600 Strong transcription Primary T regulatory cells fromperipheralblood blood
50 chr3:56796400-56805400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015