Variant report

Variant	rs546649040
Chromosome Location	chr15:31777099-31777100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31775112..31777688-chr15:31780214..31782887,2	K562	blood:
2	chr15:31748477..31753108-chr15:31776889..31783172,7	MCF-7	breast:
3	chr15:31728928..31731704-chr15:31776995..31778781,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1824097	chr15:31772875-31778703	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv827281	chr15:31773227-31779565	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv827282	chr15:31773680-31778948	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3436746	chr15:31773760-31777958	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3324341	chr15:31774110-31777508	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3388036	chr15:31774660-31777358	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3438047	chr15:31775285-31777833	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1811144	chr15:31775602-31791836	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv568824	chr15:31776343-31787108	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31765600-31779200	Weak transcription	Brain Angular Gyrus	brain
2	chr15:31775000-31777200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr15:31775400-31780400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:31775800-31779000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:31775800-31779600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:31776000-31777200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:31776000-31777400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:31776000-31777400	Enhancers	Esophagus	oesophagus
9	chr15:31776000-31780000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:31776000-31780000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:31776000-31780200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:31776000-31780600	Weak transcription	Left Ventricle	heart
13	chr15:31776200-31777200	Bivalent Enhancer	Fetal Thymus	thymus
14	chr15:31776200-31777200	ZNF genes & repeats	Lung	lung
15	chr15:31776200-31777600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:31776200-31780600	Weak transcription	Right Atrium	heart
17	chr15:31776400-31777200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr15:31776400-31777400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr15:31776400-31778800	Strong transcription	Brain Hippocampus Middle	brain
20	chr15:31776600-31777200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr15:31776600-31777200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:31776600-31777200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr15:31776600-31777200	Bivalent Enhancer	Fetal Brain Male	brain
24	chr15:31776600-31777600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
25	chr15:31776600-31780000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:31776800-31777200	Bivalent Enhancer	Primary B cells from cord blood	blood
27	chr15:31776800-31777200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr15:31776800-31777200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:31776800-31779600	Weak transcription	Pancreas	Pancrea
30	chr15:31776800-31779800	Weak transcription	Gastric	stomach
31	chr15:31776800-31780000	Weak transcription	Colonic Mucosa	Colon
32	chr15:31776800-31780600	Weak transcription	Brain Anterior Caudate	brain
33	chr15:31777000-31777200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr15:31777000-31777200	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr15:31777000-31777200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:31777000-31777600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:31777000-31777800	Weak transcription	Spleen	Spleen
38	chr15:31777000-31780400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:31777000-31780600	Weak transcription	Brain Substantia Nigra	brain
40	chr15:31777000-31780600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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