Variant report

Variant	rs546672037
Chromosome Location	chr1:192371099-192371100
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192370922..192372618-chr1:192374409..192375984,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548649	chr1:192215064-192378979	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv548654	chr1:192249116-192373779	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv548655	chr1:192259645-192372674	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv548656	chr1:192283229-192372674	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv548657	chr1:192296038-192373779	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1004342	chr1:192370887-192390633	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192368800-192371200	Weak transcription	Fetal Intestine Large	intestine
2	chr1:192370200-192371800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:192370600-192371600	Enhancers	Fetal Heart	heart
4	chr1:192370600-192372000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:192370800-192371200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:192370800-192371400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:192370800-192371400	Enhancers	HMEC	breast
8	chr1:192370800-192371400	Enhancers	NH-A	brain
9	chr1:192370800-192371400	Flanking Active TSS	Osteobl	bone
10	chr1:192370800-192371600	Enhancers	Dnd41	blood
11	chr1:192370800-192371600	Enhancers	HSMM	muscle
12	chr1:192370800-192372200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:192370800-192372400	Enhancers	Duodenum Mucosa	Duodenum
14	chr1:192370800-192372400	Enhancers	NHEK	skin
15	chr1:192370800-192373400	Enhancers	Fetal Intestine Small	intestine
16	chr1:192371000-192371200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:192371000-192371200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:192371000-192371400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:192371000-192371400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:192371000-192371400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:192371000-192371400	Enhancers	Adipose Nuclei	Adipose
22	chr1:192371000-192371400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr1:192371000-192371400	Enhancers	Stomach Smooth Muscle	stomach

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