Variant report

Variant	rs546701345
Chromosome Location	chr4:22380521-22380522
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv428756	chr4:22239826-22406106	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22329000-22389400	Weak transcription	Pancreas	Pancrea
2	chr4:22336600-22385400	Weak transcription	Fetal Intestine Large	intestine
3	chr4:22365600-22386800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:22365800-22384600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:22366000-22385000	Weak transcription	NHEK	skin
6	chr4:22368800-22418600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:22371600-22449800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:22372000-22400400	Weak transcription	Gastric	stomach
9	chr4:22374800-22383600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:22375000-22385000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:22376000-22382200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:22376000-22385200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:22376400-22389200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:22377600-22389800	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:22378600-22389200	Weak transcription	Aorta	Aorta
16	chr4:22379800-22384800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:22380000-22381200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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