Variant report

Variant	rs546717131
Chromosome Location	chr6:150732296-150732297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150725228..150728366-chr6:150731535..150733828,3	K562	blood:
2	chr17:41400272..41402043-chr6:150732136..150734095,2	K562	blood:
3	chr6:150731412..150734298-chr6:150879211..150881939,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150725400-150733000	Weak transcription	Stomach Mucosa	stomach
2	chr6:150727600-150734000	Enhancers	Osteobl	bone
3	chr6:150728400-150732400	Enhancers	Fetal Lung	lung
4	chr6:150730200-150732800	Enhancers	Fetal Heart	heart
5	chr6:150730200-150732800	Enhancers	Fetal Kidney	kidney
6	chr6:150730400-150732400	Enhancers	Fetal Stomach	stomach
7	chr6:150730400-150733000	Enhancers	HSMMtube	muscle
8	chr6:150730600-150732400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:150730600-150732600	Enhancers	Colon Smooth Muscle	Colon
10	chr6:150730600-150733600	Enhancers	NH-A	brain
11	chr6:150730800-150732600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:150731000-150735200	Weak transcription	NHEK	skin
13	chr6:150731000-150739000	Weak transcription	Hela-S3	cervix
14	chr6:150731200-150732600	Weak transcription	Gastric	stomach
15	chr6:150731200-150733600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:150731200-150740200	Weak transcription	Spleen	Spleen
17	chr6:150731400-150732600	Weak transcription	Psoas Muscle	Psoas
18	chr6:150731400-150733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:150731400-150734800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:150731600-150732400	Enhancers	HSMM	muscle
21	chr6:150731600-150732600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:150731800-150732400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:150731800-150732400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:150731800-150733800	Weak transcription	Brain Germinal Matrix	brain
25	chr6:150731800-150734600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:150732000-150732400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:150732000-150740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:150732200-150739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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