Variant report

Variant	rs546728419
Chromosome Location	chr7:38581056-38581057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1018890	chr7:38557432-38600944	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1963446	chr7:38580697-38581133	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38579400-38586800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:38580200-38581200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:38580600-38581800	Enhancers	Fetal Heart	heart
4	chr7:38580600-38583800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:38580600-38583800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:38580800-38581400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr7:38580800-38581800	Enhancers	Left Ventricle	heart
8	chr7:38580800-38582200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr7:38581000-38581600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:38581000-38581800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links