Variant report

Variant	rs546746325
Chromosome Location	chr19:55945849-55945850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:55917487..55920420-chr19:55941767..55946909,5	MCF-7	breast:
2	chr19:55917469..55921438-chr19:55945356..55952187,11	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ISOC2-3	chr19:55945844-55946911	NONHSAT068037

Variant related genes	Relation type
ENSG00000108106	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
2	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
3	nsv912463	chr19:55845386-56004901	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
4	nsv912473	chr19:55874642-56145428	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
5	nsv912477	chr19:55936376-55972950	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv912478	chr19:55936376-56045522	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
7	nsv912479	chr19:55942456-55969746	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	esv3421675	chr19:55943765-55946313	Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3331220	chr19:55944540-55947838	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55941200-55953400	Weak transcription	Right Atrium	heart
2	chr19:55941600-55946800	Strong transcription	Brain Cingulate Gyrus	brain
3	chr19:55944200-55952400	Weak transcription	Brain Angular Gyrus	brain
4	chr19:55945200-55948200	Weak transcription	Brain Hippocampus Middle	brain
5	chr19:55945400-55947000	Strong transcription	Brain Inferior Temporal Lobe	brain
6	chr19:55945600-55946600	Bivalent Enhancer	Esophagus	oesophagus
7	chr19:55945600-55946800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:55945800-55946000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
9	chr19:55945800-55946000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr19:55945800-55946000	ZNF genes & repeats	Fetal Kidney	kidney
11	chr19:55945800-55946000	Bivalent Enhancer	Gastric	stomach
12	chr19:55945800-55946200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr19:55945800-55946200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
14	chr19:55945800-55946600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr19:55945800-55946600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:55945800-55946600	ZNF genes & repeats	Spleen	Spleen
17	chr19:55945800-55946600	ZNF genes & repeats	Hela-S3	cervix
18	chr19:55945800-55946800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
19	chr19:55945800-55946800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:55945800-55946800	Bivalent/Poised TSS	Fetal Lung	lung
21	chr19:55945800-55946800	Genic enhancers	Pancreas	Pancrea

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