Variant report

Variant	rs546753671
Chromosome Location	chr4:26941611-26941612
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26935465..26937974-chr4:26941266..26944135,2	K562	blood:
2	chr4:26859274..26863088-chr4:26939649..26941972,3	K562	blood:

Variant related genes	Relation type
ENSG00000240005	Chromatin interaction
ENSG00000109689	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv966490	chr4:26940200-26946323	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26911600-26965800	Weak transcription	HMEC	breast
2	chr4:26914800-26942200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:26923000-26942400	Weak transcription	Fetal Brain Male	brain
4	chr4:26923000-26942400	Weak transcription	Left Ventricle	heart
5	chr4:26923200-26942400	Weak transcription	Brain Angular Gyrus	brain
6	chr4:26923200-26965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
8	chr4:26923400-26954400	Weak transcription	HSMM	muscle
9	chr4:26923400-26960600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:26923800-26943800	Weak transcription	Fetal Lung	lung
11	chr4:26924400-26955200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:26933000-26942400	Weak transcription	Right Atrium	heart
13	chr4:26936000-26944600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr4:26937800-26942200	Enhancers	K562	blood
15	chr4:26938000-26945000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:26938600-26969000	Weak transcription	Gastric	stomach
17	chr4:26938800-26942400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:26938800-26945000	Weak transcription	Psoas Muscle	Psoas
19	chr4:26938800-26965600	Weak transcription	NHLF	lung
20	chr4:26939000-26954000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:26939200-26948000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:26939200-26949200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr4:26939200-26969000	Weak transcription	Pancreas	Pancrea
24	chr4:26939600-26942000	Weak transcription	Primary B cells from cord blood	blood
25	chr4:26939600-26942000	Weak transcription	Stomach Mucosa	stomach
26	chr4:26939600-26943800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:26940200-26942800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr4:26940200-26943200	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr4:26940200-26944600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr4:26940200-26945200	Enhancers	Ovary	ovary
31	chr4:26940400-26942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:26940400-26942600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:26940400-26945600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr4:26940400-26947800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr4:26940600-26942800	Enhancers	Primary B cells from peripheral blood	blood
36	chr4:26940600-26944600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr4:26940800-26941800	Weak transcription	Fetal Stomach	stomach
38	chr4:26940800-26942800	Enhancers	Brain Substantia Nigra	brain
39	chr4:26940800-26943000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr4:26940800-26944200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:26941000-26942000	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr4:26941000-26942200	Enhancers	Duodenum Mucosa	Duodenum
43	chr4:26941200-26943000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr4:26941400-26942000	Enhancers	H9 Cell Line	embryonic stem cell
45	chr4:26941400-26942200	Enhancers	Brain Cingulate Gyrus	brain
46	chr4:26941400-26942200	Enhancers	Small Intestine	intestine
47	chr4:26941400-26942800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:26941400-26942800	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr4:26941400-26942800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr4:26941400-26942800	Enhancers	Brain Hippocampus Middle	brain

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