Variant report

Variant	rs546760054
Chromosome Location	chr11:75235944-75235945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75218923..75220446-chr11:75235371..75237646,2	K562	blood:
2	chr11:75108861..75111951-chr11:75234433..75238212,4	K562	blood:
3	chr11:75189541..75191420-chr11:75235512..75237815,2	K562	blood:
4	chr11:75045439..75047359-chr11:75234141..75236360,2	MCF-7	breast:
5	chr11:75137530..75143776-chr11:75234822..75239544,9	MCF-7	breast:
6	chr11:75109262..75112458-chr11:75235870..75238742,4	MCF-7	breast:
7	chr11:75189920..75194162-chr11:75235512..75239199,3	K562	blood:
8	chr11:75162095..75164647-chr11:75235506..75237767,3	MCF-7	breast:
9	chr11:75108861..75112568-chr11:75234338..75239079,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000199090	Chromatin interaction
ENSG00000254460	Chromatin interaction
ENSG00000149243	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
3	esv3371732	chr11:75235729-75238277	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75232200-75236200	Weak transcription	Aorta	Aorta
2	chr11:75234200-75236600	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr11:75234400-75236000	Enhancers	Lung	lung
4	chr11:75234400-75236000	Flanking Active TSS	Pancreas	Pancrea
5	chr11:75234600-75236600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr11:75234800-75236000	Enhancers	Liver	Liver
7	chr11:75234800-75236000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
8	chr11:75234800-75236000	Enhancers	Ovary	ovary
9	chr11:75234800-75236000	Flanking Active TSS	HSMM	muscle
10	chr11:75234800-75236600	Bivalent/Poised TSS	Fetal Brain Female	brain
11	chr11:75235000-75236000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:75235000-75236000	Enhancers	Left Ventricle	heart
13	chr11:75235000-75236000	Flanking Active TSS	Spleen	Spleen
14	chr11:75235000-75236400	Flanking Active TSS	GM12878-XiMat	blood
15	chr11:75235000-75236600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr11:75235200-75236000	Bivalent Enhancer	Primary B cells from cord blood	blood
17	chr11:75235200-75236000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:75235200-75236000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
19	chr11:75235200-75236400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
20	chr11:75235200-75236600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
21	chr11:75235200-75236600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr11:75235200-75236600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
23	chr11:75235200-75236600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr11:75235200-75236600	Flanking Active TSS	Hela-S3	cervix
25	chr11:75235200-75236600	Flanking Active TSS	HUVEC	blood vessel
26	chr11:75235200-75237600	Active TSS	Brain Hippocampus Middle	brain
27	chr11:75235200-75237800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr11:75235200-75237800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:75235400-75236000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:75235400-75236000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:75235400-75236000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr11:75235400-75236000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr11:75235400-75236000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:75235400-75236000	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
35	chr11:75235400-75236000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
36	chr11:75235400-75236000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
37	chr11:75235400-75236000	Bivalent/Poised TSS	NHDF-Ad	bronchial
38	chr11:75235400-75236200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:75235400-75236200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:75235400-75236200	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr11:75235400-75236200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr11:75235400-75236200	Flanking Bivalent TSS/Enh	Osteobl	bone
43	chr11:75235400-75236600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:75235400-75236600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
45	chr11:75235400-75236800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
46	chr11:75235400-75236800	Bivalent Enhancer	Stomach Mucosa	stomach
47	chr11:75235400-75238000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
48	chr11:75235600-75236000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
49	chr11:75235600-75236000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
50	chr11:75235600-75236000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell

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