Variant report

Variant	rs546786040
Chromosome Location	chr3:52930700-52930701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762328	chr3:52774884-53002150	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3446915	chr3:52786850-53049217	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3339338	chr3:52930462-52933260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52928200-52930800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:52928400-52931000	Weak transcription	Small Intestine	intestine
3	chr3:52929600-52931200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr3:52929600-52931200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:52929600-52931200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr3:52929800-52931000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr3:52929800-52931000	Flanking Active TSS	Brain Angular Gyrus	brain
8	chr3:52929800-52931000	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr3:52929800-52931000	Flanking Active TSS	Thymus	Thymus
10	chr3:52929800-52931200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
11	chr3:52929800-52931200	Flanking Active TSS	Fetal Thymus	thymus
12	chr3:52929800-52931200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr3:52929800-52931400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:52929800-52932200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:52929800-52932200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr3:52930000-52930800	Enhancers	Fetal Heart	heart
17	chr3:52930000-52930800	Flanking Active TSS	HMEC	breast
18	chr3:52930000-52931000	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr3:52930000-52931000	Flanking Active TSS	Colon Smooth Muscle	Colon
20	chr3:52930000-52931200	Flanking Active TSS	Brain Substantia Nigra	brain
21	chr3:52930000-52931400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr3:52930000-52931400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr3:52930000-52932000	Active TSS	H9 Cell Line	embryonic stem cell
24	chr3:52930000-52932200	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr3:52930000-52932200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:52930200-52930800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr3:52930200-52930800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr3:52930200-52931000	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr3:52930200-52931000	Flanking Active TSS	NHEK	skin
30	chr3:52930200-52931200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
31	chr3:52930200-52931200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:52930200-52931200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr3:52930200-52931200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:52930200-52931200	Flanking Active TSS	Fetal Brain Female	brain
35	chr3:52930200-52931200	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr3:52930200-52931200	Flanking Active TSS	Dnd41	blood
37	chr3:52930200-52931400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr3:52930200-52931400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:52930200-52932000	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr3:52930200-52932000	Active TSS	Right Atrium	heart
41	chr3:52930200-52932200	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr3:52930200-52932200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr3:52930200-52932200	Active TSS	GM12878-XiMat	blood
44	chr3:52930400-52930800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr3:52930400-52930800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr3:52930400-52930800	Flanking Active TSS	Stomach Mucosa	stomach
47	chr3:52930400-52931000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:52930400-52931000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:52930400-52931000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:52930400-52931000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links