Variant report

Variant	rs546790217
Chromosome Location	chr9:95970211-95970212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95947943..95949965-chr9:95968515..95970941,2	K562	blood:
2	chr9:95969895..95975601-chr9:95984404..95988658,5	MCF-7	breast:
3	chr9:95961070..95962823-chr9:95969517..95972182,2	K562	blood:
4	chr9:95969627..95972419-chr9:95984512..95987236,2	MCF-7	breast:
5	chr9:95967693..95970239-chr9:96069925..96071737,2	MCF-7	breast:
6	chr9:95960782..95962974-chr9:95969485..95971200,2	MCF-7	breast:
7	chr9:95965438..95972862-chr9:95973191..95979158,8	MCF-7	breast:
8	chr9:95963232..95968490-chr9:95968804..95973983,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165238	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3372585	chr9:95968731-95972929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95955800-95985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:95957000-95973400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:95958200-95972800	Enhancers	Left Ventricle	heart
4	chr9:95958200-95975600	Enhancers	Pancreas	Pancrea
5	chr9:95960400-95971400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:95960600-95975800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:95962200-95970600	Enhancers	Fetal Brain Male	brain
8	chr9:95962200-95973400	Enhancers	Right Ventricle	heart
9	chr9:95962800-95972600	Enhancers	Fetal Muscle Leg	muscle
10	chr9:95962800-95975600	Enhancers	Fetal Intestine Large	intestine
11	chr9:95963200-95970800	Enhancers	Fetal Thymus	thymus
12	chr9:95963200-95971200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:95963400-95972800	Enhancers	Psoas Muscle	Psoas
14	chr9:95963800-95972400	Enhancers	Right Atrium	heart
15	chr9:95964000-95971000	Enhancers	Brain Hippocampus Middle	brain
16	chr9:95965800-95971200	Enhancers	Brain Cingulate Gyrus	brain
17	chr9:95965800-95973200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:95966200-95973000	Enhancers	Colonic Mucosa	Colon
19	chr9:95966800-95971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:95966800-95971000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr9:95966800-95971600	Enhancers	Spleen	Spleen
22	chr9:95967000-95970400	Enhancers	Adipose Nuclei	Adipose
23	chr9:95967200-95971000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:95967200-95971200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:95967400-95970800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr9:95967600-95973200	Genic enhancers	Fetal Intestine Small	intestine
27	chr9:95968000-95970600	Weak transcription	Small Intestine	intestine
28	chr9:95968200-95971800	Enhancers	Colon Smooth Muscle	Colon
29	chr9:95968400-95970600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:95968400-95970600	Enhancers	HepG2	liver
31	chr9:95968600-95971000	Enhancers	Fetal Stomach	stomach
32	chr9:95968600-95972200	Enhancers	Fetal Muscle Trunk	muscle
33	chr9:95968800-95973600	Enhancers	Placenta	Placenta
34	chr9:95969200-95970600	Flanking Active TSS	Fetal Brain Female	brain
35	chr9:95969200-95970600	Enhancers	Fetal Lung	lung
36	chr9:95969200-95971000	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr9:95969200-95975200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:95969400-95970600	Enhancers	Fetal Kidney	kidney
39	chr9:95969600-95970400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:95969600-95970400	Flanking Active TSS	Brain Germinal Matrix	brain
41	chr9:95969600-95970600	Flanking Active TSS	Osteobl	bone
42	chr9:95969600-95970800	Enhancers	Esophagus	oesophagus
43	chr9:95969600-95971000	Enhancers	Brain Substantia Nigra	brain
44	chr9:95969800-95970400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:95969800-95970600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr9:95969800-95970600	Enhancers	Fetal Heart	heart
47	chr9:95969800-95970800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:95969800-95976800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr9:95970000-95970400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:95970000-95970400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--

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