Variant report

Variant	rs546853240
Chromosome Location	chr3:133016565-133016566
allele	-/AAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004358	chr3:133014772-133025177	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2760760	chr3:133014772-133025189	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1006173	chr3:133015093-133025177	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv4016	chr3:133015463-133032477	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv12956	chr3:133016100-133025982	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv514168	chr3:133016526-133023166	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133010400-133016600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:133014000-133017000	Enhancers	Ovary	ovary
3	chr3:133014200-133016600	Enhancers	Brain Germinal Matrix	brain
4	chr3:133014200-133016600	Enhancers	Fetal Muscle Leg	muscle
5	chr3:133014400-133017000	Enhancers	Fetal Brain Male	brain
6	chr3:133014600-133019000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:133014800-133019800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:133014800-133019800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:133014800-133020800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:133015000-133019800	Weak transcription	HSMM	muscle
11	chr3:133015400-133016600	Enhancers	Fetal Brain Female	brain
12	chr3:133015400-133016800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:133015400-133019000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:133015400-133019400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:133015400-133019400	Weak transcription	HUVEC	blood vessel
16	chr3:133015400-133019600	Weak transcription	Osteobl	bone
17	chr3:133015600-133016800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:133015600-133019000	Weak transcription	NH-A	brain
19	chr3:133015600-133019200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:133015600-133020000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:133015800-133019200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:133016200-133020200	Weak transcription	HSMMtube	muscle
23	chr3:133016400-133016600	Enhancers	Left Ventricle	heart
24	chr3:133016400-133016600	Enhancers	Right Atrium	heart
25	chr3:133016400-133038200	Weak transcription	Fetal Lung	lung

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