Variant report

Variant	rs546864946
Chromosome Location	chr13:53524498-53524499
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53516600-53525600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr13:53521600-53524800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:53521600-53525200	Enhancers	Fetal Stomach	stomach
4	chr13:53521800-53524800	Enhancers	Fetal Muscle Leg	muscle
5	chr13:53521800-53526000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:53522000-53525400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:53522600-53525600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:53522800-53527000	Weak transcription	Dnd41	blood
9	chr13:53522800-53529000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:53523200-53527600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr13:53523400-53524800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr13:53523600-53524600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr13:53523600-53525000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr13:53523600-53526400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr13:53523800-53524600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:53523800-53524600	Enhancers	Brain Anterior Caudate	brain
17	chr13:53523800-53525200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr13:53523800-53525400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr13:53524200-53525200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr13:53524200-53525200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr13:53524200-53525400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr13:53524200-53525800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr13:53524200-53526000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr13:53524200-53526000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:53524200-53526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr13:53524200-53528400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:53524200-53528600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr13:53524400-53524800	Enhancers	Fetal Muscle Trunk	muscle
29	chr13:53524400-53525000	Enhancers	Brain Angular Gyrus	brain
30	chr13:53524400-53525000	Enhancers	Brain Cingulate Gyrus	brain
31	chr13:53524400-53526400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr13:53524400-53527000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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