Variant report

Variant	rs546868961
Chromosome Location	chr1:173743844-173743845
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173743782..173745551-chr1:173748719..173750353,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	nsv831926	chr1:173702403-173894667	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	291 gene(s)	inside rSNPs	diseases
3	nsv825420	chr1:173743569-173744435	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173726200-173760600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:173726600-173749000	Weak transcription	Fetal Heart	heart
3	chr1:173727200-173744000	Weak transcription	NH-A	brain
4	chr1:173727600-173744600	Weak transcription	HSMM	muscle
5	chr1:173727600-173750600	Weak transcription	HUVEC	blood vessel
6	chr1:173727600-173751400	Weak transcription	NHDF-Ad	bronchial
7	chr1:173727800-173744000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:173728000-173744400	Weak transcription	NHLF	lung
9	chr1:173728400-173744200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:173728400-173744200	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:173728600-173744400	Weak transcription	Fetal Brain Male	brain
12	chr1:173728800-173744000	Weak transcription	Aorta	Aorta
13	chr1:173728800-173744200	Weak transcription	Pancreas	Pancrea
14	chr1:173728800-173744200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:173728800-173744200	Weak transcription	HMEC	breast
16	chr1:173728800-173744600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:173728800-173744600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:173728800-173744600	Weak transcription	Osteobl	bone
19	chr1:173728800-173748600	Weak transcription	Hela-S3	cervix
20	chr1:173728800-173749000	Weak transcription	Colonic Mucosa	Colon
21	chr1:173728800-173750000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:173728800-173764800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr1:173729000-173744000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:173729000-173744000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:173729000-173744000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:173729000-173744000	Weak transcription	Brain Angular Gyrus	brain
27	chr1:173729000-173744000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr1:173729000-173744000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr1:173729000-173744600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:173729000-173749000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:173729000-173752400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr1:173729000-173752600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:173729000-173752600	Weak transcription	Right Ventricle	heart
34	chr1:173729200-173744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr1:173729600-173752200	Weak transcription	A549	lung
36	chr1:173729800-173744000	Weak transcription	Psoas Muscle	Psoas
37	chr1:173729800-173781800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:173730000-173744200	Weak transcription	Fetal Kidney	kidney
39	chr1:173730200-173744000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:173731000-173749000	Weak transcription	GM12878-XiMat	blood
41	chr1:173732800-173744800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr1:173734000-173744000	Weak transcription	Brain Germinal Matrix	brain
43	chr1:173734000-173744200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:173734000-173744400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:173734200-173744200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr1:173735800-173744000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr1:173735800-173781000	Weak transcription	Small Intestine	intestine
48	chr1:173736000-173751200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr1:173736600-173751200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr1:173736600-173792400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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