Variant report

Variant	rs546939135
Chromosome Location	chr6:128456630-128456631
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128455236..128457276-chr6:128460742..128463040,2	K562	blood:
2	chr6:128444719..128446482-chr6:128455011..128457860,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv886651	chr6:128450019-128565778	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv886652	chr6:128455539-128496557	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv886653	chr6:128455539-128555805	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128434400-128456800	Weak transcription	Fetal Stomach	stomach
2	chr6:128440200-128469200	Weak transcription	HSMM	muscle
3	chr6:128446800-128460800	Weak transcription	HepG2	liver
4	chr6:128450200-128480800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:128452600-128505200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:128452800-128458000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:128452800-128459400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:128452800-128459800	Weak transcription	Brain Substantia Nigra	brain
9	chr6:128452800-128460000	Weak transcription	Brain Angular Gyrus	brain
10	chr6:128452800-128460000	Weak transcription	Brain Anterior Caudate	brain
11	chr6:128452800-128464800	Weak transcription	Ovary	ovary
12	chr6:128453000-128457200	Weak transcription	Fetal Heart	heart
13	chr6:128453000-128459800	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:128453000-128459800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:128453000-128462600	Weak transcription	Fetal Lung	lung
16	chr6:128453000-128471600	Weak transcription	NH-A	brain
17	chr6:128453200-128457800	Weak transcription	Stomach Mucosa	stomach
18	chr6:128453800-128461000	Weak transcription	NHLF	lung
19	chr6:128455400-128456800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:128455600-128456800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:128455600-128456800	Enhancers	Fetal Intestine Large	intestine
22	chr6:128455600-128456800	Enhancers	Hela-S3	cervix
23	chr6:128455800-128456800	Genic enhancers	HSMMtube	muscle
24	chr6:128455800-128456800	Enhancers	NHEK	skin
25	chr6:128455800-128457000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:128456000-128461200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:128456000-128465400	Weak transcription	Left Ventricle	heart
28	chr6:128456000-128468400	Weak transcription	Fetal Intestine Small	intestine
29	chr6:128456200-128456800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:128456200-128460000	Weak transcription	Small Intestine	intestine
31	chr6:128456400-128456800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:128456400-128456800	Enhancers	Right Atrium	heart
33	chr6:128456400-128457000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:128456600-128457800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:128456600-128457800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:128456600-128460200	Weak transcription	A549	lung
37	chr6:128456600-128461000	Weak transcription	Osteobl	bone
38	chr6:128456600-128468200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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