Variant report

Variant	rs546977791
Chromosome Location	chr14:105487239-105487240
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105486868..105487849-chr5:32174032..32174786,2	Hela-S3	cervix:
2	chr14:105486883..105487875-chr22:20003789..20004397,2	NB4	blood:
3	chr14:105448840..105458160-chr14:105477229..105492100,32	MCF-7	breast:
4	chr14:105433505..105435724-chr14:105485407..105487302,3	MCF-7	breast:
5	chr14:91719454..91721196-chr14:105485450..105487377,2	MCF-7	breast:
6	chr14:105486497..105489125-chr17:57923024..57925819,2	MCF-7	breast:
7	chr14:105436785..105438892-chr14:105486187..105488298,2	MCF-7	breast:
8	chr14:105487034..105487793-chr5:40834950..40835755,2	Hela-S3	cervix:
9	chr1:32478407..32481120-chr14:105486396..105489029,2	MCF-7	breast:
10	chr11:62609033..62609780-chr14:105486942..105487714,2	Hela-S3	cervix:
11	chr14:105486865..105487846-chr3:33481300..33482173,3	Hela-S3	cervix:
12	chr14:105266268..105268334-chr14:105486957..105488737,2	K562	blood:
13	chr14:105486767..105487298-chr2:101618521..101619073,2	Hela-S3	cervix:
14	chr14:105486934..105489265-chr14:106372865..106374868,2	MCF-7	breast:
15	chr11:61099687..61101832-chr14:105486537..105488632,2	MCF-7	breast:
16	chr14:105440890..105445623-chr14:105485614..105489562,6	MCF-7	breast:
17	chr14:105452399..105454814-chr14:105486903..105489011,2	K562	blood:
18	chr14:105452399..105454972-chr14:105485871..105488403,3	K562	blood:
19	chr12:133287331..133288118-chr14:105487145..105487714,2	Hela-S3	cervix:
20	chr14:105444693..105446444-chr14:105485592..105488194,3	K562	blood:
21	chr13:30994882..30996624-chr14:105486815..105488423,2	MCF-7	breast:
22	chr14:105433937..105458439-chr14:105476653..105492775,70	MCF-7	breast:
23	chr14:105485865..105488702-chr14:105521834..105523359,2	K562	blood:
24	chr14:105486944..105489300-chr14:105953502..105956286,2	MCF-7	breast:
25	chr14:105331438..105333394-chr14:105486290..105488258,2	MCF-7	breast:
26	chr14:105329781..105332832-chr14:105486734..105489071,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213145	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000121774	Chromatin interaction
ENSG00000153560	Chromatin interaction
ENSG00000119714	Chromatin interaction
ENSG00000179627	Chromatin interaction
ENSG00000272086	Chromatin interaction
ENSG00000099889	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000099814	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000071082	Chromatin interaction
ENSG00000225039	Chromatin interaction
ENSG00000247077	Chromatin interaction
ENSG00000149476	Chromatin interaction
ENSG00000113384	Chromatin interaction
ENSG00000145592	Chromatin interaction
ENSG00000167986	Chromatin interaction
ENSG00000140104	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000223947	Chromatin interaction
ENSG00000185567	Chromatin interaction
ENSG00000183484	Chromatin interaction
ENSG00000211925	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902419	chr14:105381763-105494262	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv456457	chr14:105404384-105555396	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv566141	chr14:105404384-105555396	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
8	nsv902420	chr14:105410183-105494262	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv902421	chr14:105410183-105574843	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
11	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
12	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
13	nsv1042303	chr14:105435649-105633544	Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
14	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
17	nsv566151	chr14:105459140-105555396	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
18	nsv456459	chr14:105459140-105617891	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
19	nsv566152	chr14:105459140-105617891	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
20	nsv902425	chr14:105463936-105690092	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
21	nsv983941	chr14:105485574-105534240	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
22	esv3421474	chr14:105485932-105488480	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases
23	esv3437595	chr14:105486432-105489280	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases
24	esv3416622	chr14:105486557-105488955	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105485800-105488000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:105485800-105488000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:105485800-105488200	Active TSS	Colonic Mucosa	Colon
4	chr14:105485800-105488200	Active TSS	Esophagus	oesophagus
5	chr14:105485800-105488800	Active TSS	H1 Cell Line	embryonic stem cell
6	chr14:105485800-105489000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:105486000-105488000	Active TSS	Placenta Amnion	Placenta Amnion
8	chr14:105486000-105488000	Active TSS	HMEC	breast
9	chr14:105486000-105488200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:105486000-105488600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr14:105486000-105488800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr14:105486000-105488800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr14:105486000-105488800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr14:105486000-105489000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:105486000-105489000	Active TSS	GM12878-XiMat	blood
16	chr14:105486200-105488000	Active TSS	Gastric	stomach
17	chr14:105486200-105488200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:105486200-105488200	Active TSS	Left Ventricle	heart
19	chr14:105486200-105488200	Active TSS	Hela-S3	cervix
20	chr14:105486200-105488200	Active TSS	HSMMtube	muscle
21	chr14:105486200-105488200	Active TSS	NHLF	lung
22	chr14:105486200-105488400	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr14:105486200-105488600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr14:105486200-105488600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr14:105486200-105488600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr14:105486200-105488800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:105486200-105489000	Active TSS	HUES64 Cell Line	embryonic stem cell
28	chr14:105486400-105487400	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr14:105486400-105487400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr14:105486400-105487800	Active TSS	Fetal Thymus	thymus
31	chr14:105486400-105487800	Active TSS	HUVEC	blood vessel
32	chr14:105486400-105488200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:105486400-105488200	Active TSS	HSMM	muscle
34	chr14:105486400-105488200	Active TSS	NHDF-Ad	bronchial
35	chr14:105486400-105488400	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr14:105486400-105488400	Active TSS	Fetal Lung	lung
37	chr14:105486400-105488400	Active TSS	Ovary	ovary
38	chr14:105486400-105488600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:105486400-105488600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:105486400-105488800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:105486400-105488800	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr14:105486400-105488800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:105486600-105487800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:105486600-105487800	Active TSS	Osteobl	bone
45	chr14:105486600-105488000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr14:105486600-105488000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr14:105486600-105488000	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr14:105486600-105488000	Active TSS	Brain Angular Gyrus	brain
49	chr14:105486600-105488000	Active TSS	Brain Germinal Matrix	brain
50	chr14:105486600-105488000	Active TSS	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links