Variant report

Variant	rs546993886
Chromosome Location	chr2:151903379-151903380
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2585348	chr2:151902375-151903681	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2126528	chr2:151902907-151903540	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv5599	chr2:151902912-151903508	Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3458491	chr2:151902961-151903458	Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3498066	chr2:151902988-151903469	Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3498068	chr2:151902990-151903444	Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3498065	chr2:151903003-151903394	Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3498067	chr2:151903027-151903411	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3458493	chr2:151903031-151903385	Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3458490	chr2:151903044-151903427	Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3367375	chr2:151903048-151903382	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3148	chr2:151903054-151903507	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151891400-151906400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:151897000-151905800	Weak transcription	NHLF	lung
3	chr2:151897000-151906000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:151897000-151906000	Weak transcription	NHDF-Ad	bronchial
5	chr2:151898000-151906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:151899800-151905800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:151900400-151905800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:151900400-151905800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:151900600-151905600	Weak transcription	Osteobl	bone
10	chr2:151901000-151905800	Weak transcription	HMEC	breast
11	chr2:151901000-151906000	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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