Variant report

Variant	rs546999951
Chromosome Location	chr6:53582375-53582376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2421836	chr6:53581398-53591120	Bivalent Enhancer Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53574000-53583400	Weak transcription	Psoas Muscle	Psoas
2	chr6:53580800-53582400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:53581200-53583600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:53582000-53582600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:53582000-53583800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:53582200-53582600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:53582200-53582600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:53582200-53583000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr6:53582200-53583800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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