Variant report

Variant	rs547048585
Chromosome Location	chr6:146880236-146880237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146879793..146881818-chr6:146885067..146887501,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv981345	chr6:146880013-146886526	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146866400-146881800	Weak transcription	Brain Germinal Matrix	brain
2	chr6:146866600-146883800	Weak transcription	Small Intestine	intestine
3	chr6:146866600-146885800	Weak transcription	Pancreas	Pancrea
4	chr6:146867000-146880600	Weak transcription	Right Ventricle	heart
5	chr6:146876400-146883600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:146876400-146891400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:146876600-146880600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:146876600-146880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:146876600-146881000	Weak transcription	HMEC	breast
10	chr6:146876600-146891200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:146876800-146880800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:146876800-146880800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:146876800-146880800	Weak transcription	Adipose Nuclei	Adipose
14	chr6:146876800-146880800	Weak transcription	Colonic Mucosa	Colon
15	chr6:146876800-146880800	Weak transcription	Fetal Intestine Large	intestine
16	chr6:146876800-146880800	Weak transcription	NH-A	brain
17	chr6:146876800-146880800	Weak transcription	NHLF	lung
18	chr6:146876800-146881000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:146876800-146881800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:146876800-146881800	Weak transcription	HUVEC	blood vessel
21	chr6:146876800-146882200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:146876800-146882200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:146876800-146882200	Weak transcription	Liver	Liver
24	chr6:146876800-146883600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:146876800-146889000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:146877000-146880800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:146877000-146880800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:146877000-146880800	Weak transcription	NHDF-Ad	bronchial
29	chr6:146877000-146881000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:146877000-146881400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:146877000-146881600	Weak transcription	Osteobl	bone
32	chr6:146877000-146882400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:146877000-146882400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:146877000-146883000	Weak transcription	HSMM	muscle
35	chr6:146877200-146881400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:146877600-146881400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:146877600-146881800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:146879200-146880400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:146879400-146881400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:146879400-146881800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:146880000-146880600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:146880200-146882200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links