Variant report

Variant	rs547066758
Chromosome Location	chr13:51733697-51733698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv900079	chr13:51711436-51739168	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900080	chr13:51711436-51754873	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv977239	chr13:51733532-51738240	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51727000-51733800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr13:51728200-51742600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51729000-51749200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr13:51730400-51734400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:51731800-51733800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:51731800-51734000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:51732000-51734200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:51732200-51734000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:51732400-51734000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:51732600-51733800	Enhancers	Brain Germinal Matrix	brain
11	chr13:51732600-51733800	Enhancers	Fetal Muscle Leg	muscle
12	chr13:51732600-51734000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:51732800-51734000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr13:51733000-51734000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr13:51733200-51733800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:51733200-51733800	Enhancers	Fetal Brain Male	brain
17	chr13:51733400-51733800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr13:51733400-51741400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr13:51733400-51743600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr13:51733600-51734000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:51733600-51734000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr13:51733600-51735600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr13:51733600-51737600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr13:51733600-51741400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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