Variant report

Variant	rs547104172
Chromosome Location	chr8:38901691-38901692
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445313	chr8:38886844-38936643	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3325011	chr8:38899844-38936643	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38869600-38902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:38882000-38913600	Weak transcription	Fetal Kidney	kidney
3	chr8:38883000-38913000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:38885200-38902800	Weak transcription	Psoas Muscle	Psoas
5	chr8:38885400-38904400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:38885600-38903600	Weak transcription	Fetal Brain Female	brain
7	chr8:38885800-38911200	Weak transcription	Ovary	ovary
8	chr8:38886400-38904400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:38887400-38911200	Weak transcription	Aorta	Aorta
10	chr8:38888200-38904400	Weak transcription	GM12878-XiMat	blood
11	chr8:38888400-38905400	Weak transcription	Primary B cells from cord blood	blood
12	chr8:38890000-38904400	Weak transcription	Gastric	stomach
13	chr8:38890200-38904400	Weak transcription	Esophagus	oesophagus
14	chr8:38890200-38911200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:38890200-38914400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:38890400-38903400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:38890400-38904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:38890400-38904200	Weak transcription	Fetal Intestine Small	intestine
19	chr8:38890400-38904200	Weak transcription	Lung	lung
20	chr8:38890400-38919800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:38895600-38902000	Weak transcription	Right Ventricle	heart
22	chr8:38895600-38911200	Weak transcription	Fetal Stomach	stomach
23	chr8:38896000-38918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:38896000-38925000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:38896200-38901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:38896200-38907600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr8:38896200-38911200	Weak transcription	Placenta	Placenta
28	chr8:38896200-38911200	Weak transcription	Left Ventricle	heart
29	chr8:38896200-38916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr8:38896400-38916400	Weak transcription	K562	blood
31	chr8:38896600-38905200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr8:38896600-38912800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:38896800-38904000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr8:38896800-38911200	Weak transcription	Adipose Nuclei	Adipose
35	chr8:38897200-38907000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:38897200-38907800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr8:38897200-38911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:38897400-38963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr8:38897600-38902800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:38897600-38903400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:38897600-38918600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr8:38898400-38901800	Weak transcription	Fetal Intestine Large	intestine
43	chr8:38899800-38901800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:38899800-38902200	Strong transcription	HepG2	liver
45	chr8:38899800-38911400	Weak transcription	Brain Angular Gyrus	brain
46	chr8:38899800-38916600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr8:38900000-38901800	Genic enhancers	NHLF	lung
48	chr8:38900000-38903400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr8:38900000-38903400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr8:38900000-38905800	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links