Variant report

Variant	rs547118735
Chromosome Location	chr9:108476827-108476828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr9:108476809-108476968	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108471863..108473966-chr9:108475296..108477111,2	K562	blood:
2	chr9:108474643..108476985-chr9:108479080..108480662,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228366	TF binding region
ENSG00000228366	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3483735	chr9:108476172-108479062	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv3528485	chr9:108476198-108479163	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3429607	chr9:108476216-108479133	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3483733	chr9:108476234-108479043	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3528487	chr9:108476248-108479102	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3483734	chr9:108476290-108478947	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3528486	chr9:108476300-108478945	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3483736	chr9:108476303-108478943	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3528488	chr9:108476303-108478943	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108457800-108492200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:108458000-108479200	Weak transcription	Fetal Brain Male	brain
3	chr9:108458000-108497800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:108458200-108478800	Weak transcription	Brain Hippocampus Middle	brain
5	chr9:108458200-108480800	Weak transcription	Brain Angular Gyrus	brain
6	chr9:108458200-108491400	Weak transcription	HSMMtube	muscle
7	chr9:108458200-108491600	Weak transcription	Brain Anterior Caudate	brain
8	chr9:108458200-108495400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:108458200-108497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:108459200-108489400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:108463200-108478400	Weak transcription	Hela-S3	cervix
12	chr9:108463200-108496800	Weak transcription	HepG2	liver
13	chr9:108463400-108487600	Weak transcription	Primary B cells from cord blood	blood
14	chr9:108465000-108496600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr9:108466800-108478400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:108469000-108485000	Weak transcription	Small Intestine	intestine
17	chr9:108469200-108478000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:108470600-108497000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr9:108470800-108487200	Weak transcription	Liver	Liver
20	chr9:108470800-108496000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr9:108471000-108495400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr9:108471200-108481600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:108471400-108477600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:108471400-108479200	Weak transcription	Esophagus	oesophagus
25	chr9:108473200-108478400	Weak transcription	K562	blood
26	chr9:108473200-108478800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr9:108473200-108487200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr9:108473200-108490800	Weak transcription	Fetal Lung	lung
29	chr9:108473200-108496400	Weak transcription	Primary T cells from cord blood	blood
30	chr9:108473200-108497200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr9:108473200-108499800	Weak transcription	Gastric	stomach
32	chr9:108473400-108492200	Weak transcription	GM12878-XiMat	blood
33	chr9:108474000-108477000	Weak transcription	Right Atrium	heart
34	chr9:108475000-108477400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:108475400-108492600	Weak transcription	Fetal Muscle Leg	muscle
36	chr9:108475600-108477200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:108475600-108477200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:108475600-108477200	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr9:108475600-108478200	Weak transcription	Fetal Heart	heart
40	chr9:108475800-108477000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr9:108475800-108477200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:108475800-108488000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr9:108476000-108477200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:108476200-108477000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr9:108476200-108477200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr9:108476200-108477200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr9:108476200-108485800	Weak transcription	Right Ventricle	heart
48	chr9:108476200-108497800	Weak transcription	Psoas Muscle	Psoas
49	chr9:108476400-108477000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:108476400-108477200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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