Variant report

Variant	rs547177102
Chromosome Location	chr3:133747896-133747897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133683547..133684239-chr3:133747628..133748622,2	MCF-7	breast:
2	chr3:133646547..133649417-chr3:133747538..133750277,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221972	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877509	chr3:133701960-133756102	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3426811	chr3:133747687-133750235	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133746200-133749200	Active TSS	Right Atrium	heart
2	chr3:133746400-133748200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
3	chr3:133746400-133748400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:133746600-133748000	Bivalent Enhancer	NHEK	skin
5	chr3:133746600-133749200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:133746800-133748400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:133747000-133748000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
8	chr3:133747000-133749000	Bivalent/Poised TSS	Colonic Mucosa	Colon
9	chr3:133747200-133748000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr3:133747200-133748600	Flanking Active TSS	HUVEC	blood vessel
11	chr3:133747400-133748000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
12	chr3:133747400-133748600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
13	chr3:133747400-133748800	Active TSS	Gastric	stomach
14	chr3:133747600-133748000	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
15	chr3:133747600-133748000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:133747600-133748000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
17	chr3:133747600-133748000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr3:133747600-133748000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:133747600-133748000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:133747600-133748000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
21	chr3:133747600-133748000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
22	chr3:133747600-133748000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:133747600-133748000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
24	chr3:133747600-133748000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
25	chr3:133747600-133748000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr3:133747600-133748000	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr3:133747600-133748000	Bivalent Enhancer	HMEC	breast
28	chr3:133747600-133748200	Bivalent Enhancer	Liver	Liver
29	chr3:133747600-133748200	Bivalent/Poised TSS	Small Intestine	intestine
30	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
31	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
32	chr3:133747600-133748400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:133747600-133748400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
34	chr3:133747600-133748400	Flanking Active TSS	Esophagus	oesophagus
35	chr3:133747600-133748400	Bivalent/Poised TSS	Fetal Kidney	kidney
36	chr3:133747600-133748400	Flanking Active TSS	Pancreas	Pancrea
37	chr3:133747600-133748600	Flanking Bivalent TSS/Enh	Placenta	Placenta
38	chr3:133747600-133749000	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
39	chr3:133747800-133748000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
40	chr3:133747800-133748000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:133747800-133748000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:133747800-133748000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:133747800-133748000	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
44	chr3:133747800-133748000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:133747800-133748000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:133747800-133748000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:133747800-133748000	Bivalent Enhancer	Brain Germinal Matrix	brain
48	chr3:133747800-133748000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
49	chr3:133747800-133748000	Bivalent Enhancer	Colon Smooth Muscle	Colon
50	chr3:133747800-133748000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum

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