The 2.0 version of rSNPBase

Variant report

Variant rs547178486
Chromosome Location chr1:172149152-172149153
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172123400-172149200 Weak transcription Brain Anterior Caudate brain
2 chr1:172128400-172149800 Weak transcription Aorta Aorta
3 chr1:172132800-172150000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr1:172138400-172149800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:172142200-172149600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr1:172145800-172150000 Weak transcription Psoas Muscle Psoas
7 chr1:172146400-172149600 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:172146600-172150200 Enhancers Stomach Mucosa stomach
9 chr1:172146800-172152000 Enhancers Fetal Intestine Small intestine
10 chr1:172147400-172154000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:172147600-172149600 Enhancers Small Intestine intestine
12 chr1:172147600-172151200 Enhancers Fetal Intestine Large intestine
13 chr1:172148000-172149400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
14 chr1:172148000-172149800 Enhancers Colon Smooth Muscle Colon
15 chr1:172148200-172149200 Weak transcription Brain Hippocampus Middle brain
16 chr1:172148200-172149400 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:172148200-172149400 Weak transcription Fetal Heart heart
18 chr1:172148200-172149600 Weak transcription Brain Inferior Temporal Lobe brain
19 chr1:172148200-172149800 Enhancers Primary T helper cells PMA-I stimulated --
20 chr1:172148200-172149800 Enhancers Duodenum Mucosa Duodenum
21 chr1:172148400-172149400 Weak transcription Primary T regulatory cells fromperipheralblood blood
22 chr1:172148800-172149400 Enhancers Ovary ovary
23 chr1:172148800-172149800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
24 chr1:172148800-172149800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr1:172148800-172152000 Enhancers Placenta Amnion Placenta Amnion
26 chr1:172149000-172149200 Flanking Active TSS GM12878-XiMat blood
27 chr1:172149000-172149400 Enhancers Primary T helper cells fromperipheralblood blood
28 chr1:172149000-172149400 Enhancers Primary T killer memory cells from peripheral blood blood
29 chr1:172149000-172149400 Flanking Active TSS Fetal Lung lung
30 chr1:172149000-172149600 Enhancers Primary B cells from cord blood blood
31 chr1:172149000-172149600 Enhancers Primary T helper naive cells from peripheral blood blood
32 chr1:172149000-172149800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:172149000-172149800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr1:172149000-172149800 Enhancers Fetal Kidney kidney
35 chr1:172149000-172149800 Enhancers Fetal Muscle Leg muscle
36 chr1:172149000-172149800 Enhancers Rectal Smooth Muscle rectum
37 chr1:172149000-172149800 Enhancers NHDF-Ad bronchial
38 chr1:172149000-172150000 Enhancers Primary T cells from cord blood blood
39 chr1:172149000-172150000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
40 chr1:172149000-172150000 Enhancers Brain Angular Gyrus brain
41 chr1:172149000-172150000 Enhancers Brain Cingulate Gyrus brain
42 chr1:172149000-172150000 Enhancers Brain Substantia Nigra brain
43 chr1:172149000-172150400 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr1:172149000-172152800 Enhancers Fetal Stomach stomach

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Last update: Aug 31, 2015