Variant report

Variant	rs547360364
Chromosome Location	chr9:96327604-96327605
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96290421..96292489-chr9:96327392..96330270,2	MCF-7	breast:
2	chr9:96210381..96218248-chr9:96327402..96333234,10	MCF-7	breast:
3	chr9:96212024..96217170-chr9:96326121..96330116,7	MCF-7	breast:
4	chr9:96213362..96216144-chr9:96327494..96330556,6	K562	blood:
5	chr9:96239972..96242150-chr9:96326116..96327649,2	MCF-7	breast:
6	chr9:96319216..96322786-chr9:96325553..96328069,3	MCF-7	breast:
7	chr9:96213362..96215557-chr9:96327494..96329016,2	K562	blood:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041803	chr9:96299639-96342013	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv824984	chr9:96310933-96375022	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv968731	chr9:96326630-96327839	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:96285200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:96285400-96327800	Strong transcription	Liver	Liver
5	chr9:96299400-96327800	Strong transcription	Placenta	Placenta
6	chr9:96302000-96328000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:96304400-96328200	Strong transcription	Adipose Nuclei	Adipose
8	chr9:96307600-96329000	Weak transcription	Right Atrium	heart
9	chr9:96312200-96327800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:96312400-96328000	Strong transcription	Hela-S3	cervix
11	chr9:96312600-96329000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:96312800-96328200	Strong transcription	Duodenum Mucosa	Duodenum
13	chr9:96317000-96327800	Strong transcription	HSMM	muscle
14	chr9:96318000-96327800	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:96318000-96327800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:96320400-96328400	Weak transcription	Fetal Heart	heart
17	chr9:96321200-96328800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:96322400-96329000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:96324800-96327800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:96324800-96328600	Weak transcription	Stomach Mucosa	stomach
21	chr9:96325000-96328800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:96325000-96329000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr9:96325600-96329000	Weak transcription	Small Intestine	intestine
24	chr9:96325800-96327800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:96325800-96328400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:96325800-96328600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr9:96326000-96328400	Weak transcription	Primary B cells from cord blood	blood
28	chr9:96326000-96328600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:96326000-96328600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:96326000-96329000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:96326200-96328400	Weak transcription	Fetal Kidney	kidney
32	chr9:96326200-96328600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr9:96326200-96328600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:96326200-96328600	Weak transcription	Brain Germinal Matrix	brain
35	chr9:96326200-96328600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:96326200-96329000	Weak transcription	Pancreas	Pancrea
37	chr9:96326400-96328200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:96326400-96328200	Weak transcription	Brain Anterior Caudate	brain
39	chr9:96326400-96328400	Weak transcription	HMEC	breast
40	chr9:96326400-96328600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:96326400-96328600	Weak transcription	HSMMtube	muscle
42	chr9:96326400-96329000	Weak transcription	Brain Angular Gyrus	brain
43	chr9:96326600-96328200	Weak transcription	HUVEC	blood vessel
44	chr9:96326600-96328600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr9:96326600-96328600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr9:96326600-96328600	Weak transcription	Fetal Brain Male	brain
47	chr9:96326600-96328600	Weak transcription	Fetal Lung	lung
48	chr9:96326600-96328600	Weak transcription	HepG2	liver
49	chr9:96326600-96328600	Weak transcription	NH-A	brain
50	chr9:96326600-96329000	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links