Variant report

Variant	rs547381143
Chromosome Location	chr4:55809556-55809557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3366988	chr4:55808045-55809893	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2521332	chr4:55808162-55809636	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55796800-55810200	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:55804200-55811200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:55806000-55809600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:55806000-55809800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:55806200-55810000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr4:55806400-55809600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:55806800-55809600	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:55806800-55812600	Enhancers	Fetal Thymus	thymus
9	chr4:55807200-55810400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:55808200-55812600	Enhancers	HUVEC	blood vessel
11	chr4:55808400-55810000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr4:55808400-55812000	Weak transcription	Adipose Nuclei	Adipose
13	chr4:55808400-55812600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr4:55808400-55812600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr4:55808600-55809800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr4:55808600-55811000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:55808600-55813000	Enhancers	Primary T cells from cord blood	blood
18	chr4:55809000-55809800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:55809000-55810400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr4:55809200-55809600	Enhancers	Primary B cells from cord blood	blood
21	chr4:55809200-55809600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr4:55809200-55809800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr4:55809200-55809800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr4:55809200-55810800	Weak transcription	Fetal Stomach	stomach
25	chr4:55809200-55811800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:55809200-55812600	Enhancers	Primary hematopoietic stem cells	blood
27	chr4:55809200-55814000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:55809400-55809800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:55809400-55813000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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