Variant report

Variant	rs547388004
Chromosome Location	chr7:65879507-65879508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65686273..65688117-chr7:65877962..65880122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169902	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv981507	chr7:65878773-65886496	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65861800-65880800	Weak transcription	Hela-S3	cervix
2	chr7:65874800-65883600	Weak transcription	HepG2	liver
3	chr7:65875200-65884400	Weak transcription	K562	blood
4	chr7:65876200-65888600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:65877000-65888600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:65878000-65879600	Active TSS	Brain Cingulate Gyrus	brain
7	chr7:65878400-65879600	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr7:65878400-65879800	Flanking Active TSS	Placenta	Placenta
9	chr7:65878600-65879600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:65878800-65879600	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr7:65879000-65879600	Enhancers	Primary B cells from peripheral blood	blood
12	chr7:65879000-65879600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr7:65879000-65879800	Enhancers	Spleen	Spleen
14	chr7:65879000-65880200	Weak transcription	NHLF	lung
15	chr7:65879000-65880400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:65879000-65880400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:65879000-65880800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:65879000-65883600	Weak transcription	Stomach Mucosa	stomach
19	chr7:65879000-65890000	Weak transcription	HSMM	muscle
20	chr7:65879000-65891800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:65879000-65893200	Weak transcription	Aorta	Aorta
22	chr7:65879000-65905600	Weak transcription	Lung	lung
23	chr7:65879000-65909000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:65879000-65922200	Weak transcription	Small Intestine	intestine
25	chr7:65879200-65879600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr7:65879200-65879600	Enhancers	Primary B cells from cord blood	blood
27	chr7:65879200-65879600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr7:65879200-65879600	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr7:65879200-65879600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr7:65879200-65879600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr7:65879200-65879600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr7:65879200-65879600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr7:65879200-65879600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr7:65879200-65879600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr7:65879200-65879600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr7:65879200-65879600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr7:65879200-65879600	Enhancers	Fetal Intestine Large	intestine
38	chr7:65879200-65879600	Enhancers	Fetal Intestine Small	intestine
39	chr7:65879200-65879600	Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr7:65879200-65879600	Enhancers	A549	lung
41	chr7:65879200-65879600	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr7:65879200-65879800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:65879200-65879800	Enhancers	Primary T cells fromperipheralblood	blood
44	chr7:65879200-65879800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:65879200-65879800	Enhancers	Liver	Liver
46	chr7:65879200-65879800	Enhancers	Fetal Muscle Trunk	muscle
47	chr7:65879200-65879800	Enhancers	Fetal Thymus	thymus
48	chr7:65879200-65879800	Enhancers	Pancreas	Pancrea
49	chr7:65879200-65879800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr7:65879200-65880000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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