The 2.0 version of rSNPBase

Variant report

Variant rs547389216
Chromosome Location chr13:30965603-30965604
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:30951400-30969400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr13:30963400-30966400 Weak transcription Fetal Muscle Trunk muscle
3 chr13:30963600-30965800 Weak transcription Fetal Brain Male brain
4 chr13:30963800-30966600 Weak transcription Fetal Brain Female brain
5 chr13:30963800-30966800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr13:30963800-30968200 Weak transcription Primary B cells from cord blood blood
7 chr13:30963800-30968400 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr13:30963800-30968600 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr13:30963800-30968800 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr13:30964000-30968600 Weak transcription Stomach Smooth Muscle stomach
11 chr13:30964000-30968800 Enhancers Fetal Thymus thymus
12 chr13:30964000-30968800 Enhancers Thymus Thymus
13 chr13:30964000-30969000 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr13:30964000-30969000 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr13:30964000-30969400 Weak transcription Spleen Spleen
16 chr13:30964200-30966800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr13:30964200-30968000 Weak transcription Primary hematopoietic stem cells blood
18 chr13:30964200-30968400 Weak transcription Primary monocytes fromperipheralblood blood
19 chr13:30964200-30968400 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr13:30964200-30968400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr13:30964200-30968400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr13:30964200-30968400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr13:30964200-30968400 Weak transcription Fetal Intestine Large intestine
24 chr13:30964200-30968400 Weak transcription Rectal Smooth Muscle rectum
25 chr13:30964200-30968600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr13:30964200-30968600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr13:30964200-30968600 Weak transcription HMEC breast
28 chr13:30964200-30968800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr13:30964200-30968800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr13:30964200-30968800 Weak transcription Adipose Nuclei Adipose
31 chr13:30964200-30968800 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr13:30964400-30965800 Weak transcription Primary T cells from cord blood blood
33 chr13:30964400-30966000 Weak transcription HepG2 liver
34 chr13:30964400-30966400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr13:30964400-30966400 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr13:30964400-30966400 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr13:30964400-30966400 Weak transcription Liver Liver
38 chr13:30964400-30966600 Weak transcription Primary T helper cells fromperipheralblood blood
39 chr13:30964400-30967000 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr13:30964400-30967200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
41 chr13:30964400-30967800 Weak transcription Primary neutrophils fromperipheralblood blood
42 chr13:30964400-30968400 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr13:30964400-30968400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
44 chr13:30964400-30968400 Weak transcription Placenta Placenta
45 chr13:30964400-30968600 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr13:30964400-30968600 Weak transcription Colon Smooth Muscle Colon
47 chr13:30964400-30968800 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr13:30964400-30969200 Weak transcription Esophagus oesophagus
49 chr13:30964800-30966800 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr13:30964800-30967600 Weak transcription Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015