Variant report

Variant	rs547475638
Chromosome Location	chr10:23633365-23633366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:23633216-23633489	MCF-7	breast:	n/a	n/a
2	RAD21	chr10:23633350-23633544	H1-hESC	embryonic stem cell:	n/a	n/a
3	REST	chr10:23633122-23634042	H1-neurons	neurons:	n/a	n/a
4	CTBP2	chr10:23633165-23633740	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr10:23633179-23633744	U87	brain:	n/a	n/a
6	MAX	chr10:23633104-23633892	SK-N-SH	brain:	n/a	n/a
7	SIN3AK20	chr10:23633124-23633504	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr10:23632708-23633724	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
9	MXI1	chr10:23633216-23633857	IMR90	lung:	n/a	n/a
10	ZNF143	chr10:23632881-23633449	H1-hESC	embryonic stem cell:	n/a	chr10:23633048-23633058
11	TEAD4	chr10:23633096-23633417	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr10:23633306-23633433	MCF-7	breast:	n/a	n/a
13	POLR2A	chr10:23633157-23633909	SK-N-SH	brain:	n/a	n/a
14	ZNF263	chr10:23632432-23633834	HEK293-T-REx	kidney:	n/a	n/a
15	MAX	chr10:23633171-23633650	A549	lung:	n/a	n/a
16	POLR2A	chr10:23633173-23633750	U87	brain:	n/a	n/a
17	POLR2A	chr10:23633269-23633495	H1-hESC	embryonic stem cell:	n/a	n/a
18	MAX	chr10:23633139-23633767	H1-hESC	embryonic stem cell:	n/a	n/a
19	CHD2	chr10:23632845-23633445	H1-hESC	embryonic stem cell:	n/a	n/a
20	MYC	chr10:23633288-23633531	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr10:23633144-23633831	H1-neurons	neurons:	n/a	n/a
22	POLR2A	chr10:23633231-23633517	MCF-7	breast:	n/a	n/a
23	POLR2A	chr10:23633174-23633642	U87	brain:	n/a	n/a
24	REST	chr10:23633178-23633522	SK-N-SH	brain:	n/a	n/a
25	POLR2A	chr10:23633356-23633382	Gliobla	brain:	n/a	n/a
26	TAF1	chr10:23633148-23633544	SK-N-SH	brain:	n/a	n/a
27	MAX	chr10:23632824-23633653	H1-hESC	embryonic stem cell:	n/a	chr10:23633044-23633054
28	POLR2A	chr10:23632771-23633765	H1-neurons	neurons:	n/a	n/a
29	SIN3A	chr10:23632621-23633849	H1-hESC	embryonic stem cell:	n/a	n/a
30	MAX	chr10:23633114-23633870	SK-N-SH	brain:	n/a	n/a
31	POLR2A	chr10:23633262-23633807	SK-N-SH	brain:	n/a	n/a
32	EGR1	chr10:23633134-23633598	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:23633326-23633376	HRPEpiC	eye:	n/a
2	chr10:23633326-23633376	NH-A	brain:	n/a
3	chr10:23633326-23633376	AG09309	skin:	n/a
4	chr10:23633326-23633376	HNPCEpiC	eye:	n/a
5	chr10:23633326-23633376	NHDF-neo	bronchial:	n/a
6	chr10:23633326-23633376	AG09319	gingival:	n/a
7	chr10:23633326-23633376	SK-N-SH_RA	brain:	n/a
8	chr10:23633326-23633376	A549	lung:	n/a
9	chr10:23633326-23633376	Jurkat	blood:	n/a
10	chr10:23633326-23633376	ProgFib	skin:	n/a
11	chr10:23633326-23633376	NHBE	bronchial:	n/a
12	chr10:23633326-23633376	GM06990	blood:	n/a
13	chr10:23633326-23633376	HepG2	liver:	n/a
14	chr10:23633326-23633376	Caco-2	colon:	n/a
15	chr10:23633326-23633376	HCF	heart:	n/a
16	chr10:23633326-23633376	MCF-7	breast:	n/a
17	chr10:23633326-23633376	H1-hESC	embryonic stem cell:	embryo
18	chr10:23633326-23633376	IMR90	lung:	fetal
19	chr10:23633326-23633376	HMEC	breast:	n/a
20	chr10:23633326-23633376	HCT-116	colon:	n/a
21	chr10:23633326-23633376	HEK293	kidney:	embryo
22	chr10:23633326-23633376	NB4	blood:	n/a
23	chr10:23633326-23633376	HIPEpiC	eye:	n/a
24	chr10:23633326-23633376	PrEC	prostate:	n/a
25	chr10:23633326-23633376	GM12878	blood:	n/a
26	chr10:23633326-23633376	GM19239	blood:	n/a
27	chr10:23633326-23633376	Hela-S3	cervix:	n/a
28	chr10:23633326-23633376	HUVEC	blood vessel:	n/a
29	chr10:23633326-23633376	HRE	kidney:	n/a
30	chr10:23633326-23633376	HRCEpiC	kidney:	n/a
31	chr10:23633326-23633376	HEEpiC	esophagus:	n/a
32	chr10:23633326-23633376	SK-N-SH	brain:	n/a
33	chr10:23633326-23633376	ovcar-3	ovarian:	n/a
34	chr10:23633326-23633376	CMK	blood:	n/a
35	chr10:23633326-23633376	SAEC	small airway:	n/a
36	chr10:23633326-23633376	BE2_C	brain:	n/a
37	chr10:23633326-23633376	PANC-1	pancreas:	n/a
38	chr10:23633326-23633376	LNCaP	prostate:	n/a
39	chr10:23633326-23633376	PFSK-1	brain:	n/a
40	chr10:23633326-23633376	SK-N-MC	brain:	n/a
41	chr10:23633326-23633376	Hepatocyte	liver:	n/a
42	chr10:23633326-23633376	HCM	heart:	n/a
43	chr10:23633326-23633376	T-47D	breast:	n/a
44	chr10:23633326-23633376	GM12891	blood:	n/a
45	chr10:23633326-23633376	HL-60	blood:	n/a
46	chr10:23633326-23633376	SKMC	muscle:	n/a
47	chr10:23633326-23633376	HPAEpiC	pulmonary alveolar:	n/a
48	chr10:23633326-23633376	AoSMC	blood vessel:	n/a
49	chr10:23633326-23633376	K562	blood:	n/a
50	chr10:23633326-23633376	AG10803	skin:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23631888..23635089-chr10:23727661..23730060,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OTUD1-1	chr10:23633353-23634110	ENSG00000224215.1

No data

Variant related genes	Relation type
C10orf67	TF binding region
C10orf67	CpG island
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357321	chr10:23631971-23634519	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3321964	chr10:23632396-23633894	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23631400-23633400	Enhancers	Fetal Heart	heart
2	chr10:23632000-23633400	Enhancers	Lung	lung
3	chr10:23632000-23634000	Active TSS	Brain Hippocampus Middle	brain
4	chr10:23632200-23633600	Active TSS	Brain Angular Gyrus	brain
5	chr10:23632200-23633800	Weak transcription	Hela-S3	cervix
6	chr10:23632200-23634000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:23632200-23634000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:23632400-23633400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:23632400-23633400	Active TSS	Duodenum Mucosa	Duodenum
10	chr10:23632400-23633400	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr10:23632400-23633400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
12	chr10:23632400-23633400	Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr10:23632400-23633600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:23632400-23633800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:23632400-23633800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:23632400-23633800	Active TSS	Fetal Brain Female	brain
17	chr10:23632400-23634000	Active TSS	Brain Cingulate Gyrus	brain
18	chr10:23632400-23634000	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr10:23632600-23633400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:23632600-23633400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:23632600-23633400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:23632600-23633400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:23632600-23633400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:23632600-23633400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:23632600-23633400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:23632600-23633400	Active TSS	Colonic Mucosa	Colon
27	chr10:23632600-23633400	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr10:23632600-23633400	Active TSS	HSMM	muscle
29	chr10:23632600-23633600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:23632600-23633600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr10:23632600-23633600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:23632600-23633600	Active TSS	Colon Smooth Muscle	Colon
33	chr10:23632600-23633600	Active TSS	Ovary	ovary
34	chr10:23632600-23633600	Active TSS	Rectal Smooth Muscle	rectum
35	chr10:23632600-23633600	Active TSS	Osteobl	bone
36	chr10:23632600-23633800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
37	chr10:23632600-23633800	Active TSS	H9 Cell Line	embryonic stem cell
38	chr10:23632600-23633800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:23632600-23633800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:23632600-23633800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:23632600-23633800	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr10:23632600-23633800	Active TSS	Right Atrium	heart
43	chr10:23632600-23633800	Active TSS	Right Ventricle	heart
44	chr10:23632600-23633800	Bivalent/Poised TSS	Thymus	Thymus
45	chr10:23632600-23634000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr10:23632600-23634000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
47	chr10:23632600-23634000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
48	chr10:23632600-23634000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
49	chr10:23632600-23634000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:23632600-23634000	Active TSS	Brain Anterior Caudate	brain

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