Variant report

Variant	rs547529255
Chromosome Location	chr1:169593400-169593401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:169593283-169593894	HUVEC	blood vessel:	n/a	n/a
2	FOS	chr1:169593353-169593817	HUVEC	blood vessel:	n/a	chr1:169593500-169593509

Variant related genes	Relation type
SELP	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169585200-169593400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:169590600-169593600	Enhancers	Dnd41	blood
3	chr1:169590800-169595200	Weak transcription	Lung	lung
4	chr1:169591600-169599600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:169592200-169594200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:169592200-169594600	Enhancers	HUVEC	blood vessel
7	chr1:169592200-169594800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:169592200-169595600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:169592200-169597600	Enhancers	Primary T cells from cord blood	blood
10	chr1:169592200-169598400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:169592200-169599400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:169592200-169599600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:169592200-169599800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr1:169592400-169593600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr1:169592400-169595000	Enhancers	Fetal Thymus	thymus
16	chr1:169592400-169596000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr1:169592600-169593600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:169592600-169594200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr1:169592600-169595000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr1:169592800-169594200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:169593200-169593800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr1:169593200-169594000	Weak transcription	Thymus	Thymus
23	chr1:169593400-169594800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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