Variant report

Variant	rs547575744
Chromosome Location	chr8:35161524-35161525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv982097	chr8:35161434-35165858	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35155800-35166800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:35159200-35162200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:35159200-35178200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:35159800-35161800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:35160400-35161800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:35160800-35161800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:35160800-35162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:35160800-35162600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:35161000-35161600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:35161000-35161600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr8:35161000-35162000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:35161000-35162200	Enhancers	Fetal Kidney	kidney
13	chr8:35161200-35161600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr8:35161400-35161600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr8:35161400-35166800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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