Variant report

Variant	rs547590122
Chromosome Location	chr1:85187069-85187070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85150908..85155231-chr1:85184814..85188587,5	K562	blood:
2	chr1:85155152..85157036-chr1:85185986..85188079,2	MCF-7	breast:
3	chr1:85153949..85156028-chr1:85184332..85187190,2	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3511544	chr1:85187067-85187518	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3511545	chr1:85187067-85187518	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85181800-85190200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:85182000-85189600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:85184200-85190000	Enhancers	Fetal Intestine Large	intestine
4	chr1:85184400-85189000	Enhancers	Fetal Intestine Small	intestine
5	chr1:85184600-85187400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:85184600-85187400	Enhancers	Fetal Lung	lung
7	chr1:85184600-85187400	Enhancers	Fetal Muscle Leg	muscle
8	chr1:85184600-85187400	Enhancers	Fetal Stomach	stomach
9	chr1:85184600-85188000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:85184600-85188600	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:85184600-85188800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:85184800-85187600	Enhancers	Brain Germinal Matrix	brain
13	chr1:85184800-85187600	Enhancers	NHLF	lung
14	chr1:85185000-85187200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:85185200-85187400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:85185400-85187200	Enhancers	Fetal Thymus	thymus
17	chr1:85185400-85187600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:85185600-85187200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr1:85185600-85187400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:85185600-85188400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:85185800-85187200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:85185800-85187400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:85185800-85189800	Enhancers	NHDF-Ad	bronchial
24	chr1:85186000-85187400	Enhancers	NH-A	brain
25	chr1:85186000-85187600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr1:85186000-85187600	Enhancers	Colon Smooth Muscle	Colon
27	chr1:85186000-85189000	Enhancers	Liver	Liver
28	chr1:85186200-85187200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:85186200-85187400	Enhancers	Brain Hippocampus Middle	brain
30	chr1:85186200-85187400	Enhancers	Brain Substantia Nigra	brain
31	chr1:85186200-85187600	Enhancers	Primary T cells from cord blood	blood
32	chr1:85186200-85189800	Enhancers	Rectal Smooth Muscle	rectum
33	chr1:85186400-85187200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:85186400-85187200	Weak transcription	Thymus	Thymus
35	chr1:85186400-85187400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:85186400-85187400	Enhancers	Brain Angular Gyrus	brain
37	chr1:85186400-85187400	Enhancers	Brain Anterior Caudate	brain
38	chr1:85186400-85187400	Enhancers	Brain Cingulate Gyrus	brain
39	chr1:85186400-85187400	Enhancers	Fetal Kidney	kidney
40	chr1:85186400-85187400	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr1:85186400-85188400	Weak transcription	Stomach Mucosa	stomach
42	chr1:85186400-85189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:85186400-85189400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr1:85186600-85190600	Enhancers	HepG2	liver
45	chr1:85186800-85187200	Enhancers	Muscle Satellite Cultured Cells	--
46	chr1:85186800-85187400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:85186800-85187400	Enhancers	HSMM	muscle
48	chr1:85186800-85187400	Enhancers	NHEK	skin
49	chr1:85186800-85187400	Enhancers	Osteobl	bone
50	chr1:85186800-85187600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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