Variant report

Variant	rs547601258
Chromosome Location	chr11:10671741-10671742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10662421..10664986-chr11:10669210..10672158,2	K562	blood:
2	chr11:10661837..10665351-chr11:10668716..10672933,3	K562	blood:
3	chr11:10669554..10672277-chr11:10684119..10685938,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv975882	chr11:10671502-10672865	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
2	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
4	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:10661200-10673600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:10662400-10672000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:10664200-10672000	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:10664200-10678800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:10664400-10675000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:10665600-10672200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:10666400-10671800	Genic enhancers	Stomach Smooth Muscle	stomach
12	chr11:10668200-10673200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:10668200-10673400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:10668400-10672200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:10668400-10673200	Weak transcription	Left Ventricle	heart
16	chr11:10668400-10673800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:10668600-10672600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:10668600-10673400	Weak transcription	Spleen	Spleen
19	chr11:10668600-10674200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:10668600-10674400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:10668800-10672000	Weak transcription	Brain Angular Gyrus	brain
22	chr11:10668800-10673400	Weak transcription	Esophagus	oesophagus
23	chr11:10668800-10674200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr11:10669200-10672000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:10669200-10673400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:10669400-10672000	Weak transcription	Brain Substantia Nigra	brain
27	chr11:10669400-10672000	Weak transcription	NHLF	lung
28	chr11:10669400-10673200	Weak transcription	Lung	lung
29	chr11:10669400-10673200	Weak transcription	NH-A	brain
30	chr11:10669400-10674400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:10669600-10673400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:10669600-10675600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:10669600-10676800	Weak transcription	Fetal Intestine Large	intestine
34	chr11:10670200-10674600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:10670200-10675000	Weak transcription	K562	blood
36	chr11:10670400-10675400	Genic enhancers	Fetal Stomach	stomach
37	chr11:10670600-10672200	Enhancers	Primary B cells from cord blood	blood
38	chr11:10670800-10672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:10670800-10672200	Enhancers	HSMMtube	muscle
40	chr11:10670800-10673200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:10670800-10673400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:10670800-10673400	Weak transcription	Right Atrium	heart
43	chr11:10670800-10675000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:10670800-10676400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:10671000-10673400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:10671000-10676200	Weak transcription	A549	lung
47	chr11:10671200-10672000	Weak transcription	Placenta	Placenta
48	chr11:10671200-10673400	Weak transcription	Ovary	ovary
49	chr11:10671400-10672800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:10671400-10673200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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