Variant report

Variant	rs547691047
Chromosome Location	chr6:37503107-37503108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37479736..37482449-chr6:37501228..37503661,2	K562	blood:
2	chr6:37497734..37501605-chr6:37502729..37507040,5	K562	blood:
3	chr6:37479736..37486031-chr6:37501228..37507298,5	K562	blood:
4	chr6:37490506..37492969-chr6:37501083..37503155,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv462914	chr6:37502585-37517485	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv602954	chr6:37502585-37517485	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37493800-37514000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:37496800-37503200	Weak transcription	GM12878-XiMat	blood
3	chr6:37500800-37503400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:37501400-37503600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:37501600-37503400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:37502000-37503400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:37502000-37503400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr6:37502000-37504400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:37502800-37503200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr6:37502800-37503200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:37502800-37503200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:37502800-37503200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:37502800-37503200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:37502800-37503200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
15	chr6:37502800-37503400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
16	chr6:37502800-37503400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
17	chr6:37502800-37503400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:37502800-37503400	Bivalent Enhancer	Fetal Brain Female	brain
19	chr6:37502800-37503600	Bivalent Enhancer	Fetal Stomach	stomach
20	chr6:37502800-37503800	Bivalent Enhancer	Fetal Kidney	kidney
21	chr6:37502800-37504000	Bivalent Enhancer	Fetal Brain Male	brain
22	chr6:37502800-37505800	Bivalent Enhancer	Fetal Lung	lung
23	chr6:37503000-37503200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
24	chr6:37503000-37503200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
25	chr6:37503000-37503200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
26	chr6:37503000-37503400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:37503000-37503400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:37503000-37503400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
29	chr6:37503000-37503400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
30	chr6:37503000-37503400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr6:37503000-37503400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr6:37503000-37503400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr6:37503000-37503400	Bivalent Enhancer	Brain Germinal Matrix	brain
34	chr6:37503000-37503400	Bivalent Enhancer	Colon Smooth Muscle	Colon
35	chr6:37503000-37503600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr6:37503000-37503600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:37503000-37503800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:37503000-37503800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr6:37503000-37504000	Bivalent Enhancer	Fetal Muscle Leg	muscle
40	chr6:37503000-37504000	Bivalent Enhancer	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links