Variant report

Variant	rs547700918
Chromosome Location	chr11:73306781-73306782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv983188	chr11:73273934-73307064	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	esv20896	chr11:73306779-73309297	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:73266600-73307800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:73272200-73307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:73275400-73307000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73276400-73307000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:73277400-73307800	Weak transcription	Fetal Intestine Large	intestine
8	chr11:73279400-73307000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:73281600-73307800	Weak transcription	Hela-S3	cervix
10	chr11:73286800-73307600	Weak transcription	Lung	lung
11	chr11:73288400-73307800	Weak transcription	Aorta	Aorta
12	chr11:73288800-73307600	Weak transcription	Fetal Kidney	kidney
13	chr11:73289400-73307000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:73289600-73306800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:73290000-73308000	Weak transcription	Primary B cells from cord blood	blood
16	chr11:73290200-73307000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:73290200-73307000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:73290200-73307000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:73290400-73308000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:73291400-73307600	Weak transcription	Pancreas	Pancrea
21	chr11:73294200-73307800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:73297400-73307600	Weak transcription	Osteobl	bone
23	chr11:73297600-73307000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:73297800-73307200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:73297800-73307400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:73297800-73307600	Weak transcription	HMEC	breast
27	chr11:73298000-73307000	Weak transcription	Small Intestine	intestine
28	chr11:73298000-73307600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:73299800-73307600	Weak transcription	Fetal Stomach	stomach
30	chr11:73300000-73307600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:73300600-73307000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:73302600-73307000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:73303200-73307600	Weak transcription	Fetal Heart	heart
34	chr11:73303400-73307600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr11:73303800-73307600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:73303800-73307600	Weak transcription	Right Atrium	heart
37	chr11:73304000-73307000	Weak transcription	Fetal Thymus	thymus
38	chr11:73304000-73307600	Weak transcription	Left Ventricle	heart
39	chr11:73304600-73307000	Enhancers	Brain Anterior Caudate	brain
40	chr11:73304600-73307000	Enhancers	Fetal Brain Male	brain
41	chr11:73304600-73307400	Enhancers	HepG2	liver
42	chr11:73304600-73307800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr11:73304600-73307800	Enhancers	Brain Substantia Nigra	brain
44	chr11:73304800-73307000	Enhancers	K562	blood
45	chr11:73304800-73307600	Weak transcription	NHLF	lung
46	chr11:73305000-73307600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:73305000-73307600	Weak transcription	Thymus	Thymus
48	chr11:73305200-73307000	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:73305200-73307000	Weak transcription	Fetal Lung	lung
50	chr11:73305200-73307800	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links