Variant report

Variant	rs547747648
Chromosome Location	chr7:39837555-39837556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv970820	chr7:39797964-39839303	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv5708	chr7:39814330-39855535	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv887974	chr7:39827400-39956829	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv970997	chr7:39837441-39839303	Weak transcription Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39812400-39837600	Weak transcription	Spleen	Spleen
2	chr7:39821400-39839000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr7:39831000-39839800	Weak transcription	Right Ventricle	heart
4	chr7:39831400-39838200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:39831800-39837600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:39831800-39838800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:39831800-39838800	Weak transcription	Ovary	ovary
8	chr7:39832000-39837600	Weak transcription	Pancreas	Pancrea
9	chr7:39833200-39838200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:39833200-39842400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:39833400-39837600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:39833600-39837800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:39833600-39838200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:39833600-39839000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr7:39833600-39845000	Weak transcription	Esophagus	oesophagus
16	chr7:39834200-39837600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:39836000-39837600	Weak transcription	Fetal Intestine Small	intestine
18	chr7:39836000-39839000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:39837400-39838200	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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