Variant report

Variant	rs547759
Chromosome Location	chr10:95393621-95393622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10882288	0.80[EUR][1000 genomes]
rs11187561	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs1409334	0.80[EUR][1000 genomes]
rs2785137	0.84[CEU][hapmap];0.83[MEX][hapmap]
rs2857300	0.96[CEU][hapmap];0.83[MEX][hapmap]
rs3824752	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs473934	0.84[CEU][hapmap]
rs4917871	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs4919339	0.80[EUR][1000 genomes]
rs701865	0.81[CEU][hapmap];0.83[MEX][hapmap]
rs7095788	0.84[CEU][hapmap]
rs714549	0.96[CEU][hapmap];0.83[MEX][hapmap]
rs714550	0.96[CEU][hapmap];0.83[MEX][hapmap];0.80[EUR][1000 genomes]
rs714551	0.80[EUR][1000 genomes]
rs716333	0.96[CEU][hapmap];0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047261	chr10:95384527-95449653	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv540746	chr10:95384527-95449653	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1050705	chr10:95384527-95469255	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv540747	chr10:95384527-95469255	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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